We present selected publications with available code and datasets to download.
Code
1. Complementary Time-Frequency Domain Networks for Dynamic Parallel MR Image Reconstruction C. Qin, J. Duan, K. Hammernik, J. Schlemper, T. Küstner, R. Botnar, C. Prieto, A. N. Price, J. V. Hajnal, and D. Rueckert TBA, submitted Full TextCode
2. Convolutional Recurrent Neural Networks for Dynamic MR Image Reconstruction C. Qin, J. Schlemper, J. Caballero, A.N. Price, J.V. Hajnal, and D. Rueckert IEEE Transactions on Medical Imaging, vol. 38, 2019 Full TextPreprintCode
3. Biomechanics-Informed Neural Networks for Myocardial Motion Tracking in MRI C. Qin, S. Wang, C. Chen, H. Qiu, W. Bai, and D. Rueckert. MICCAI 2020 Full TextPreprintCodeWebsite
4. Joint learning of motion estimation and segmentation for cardiac MR image sequences. C. Qin, W. Bai, J. Schlemper, S. E. Petersen, S. K. Piechnik, S. Neubauer, and D. Rueckert MICCAI 2018 Full TextPreprintCodeWebsite
5. Learning to Segment from Scribbles using Multi-scale Adversarial Attention Gates G. Valvano, A. Leo, S.A. Tsaftaris IEEE Transactions on Medical Imaging, PreprintCodeWebsite
6. Pseudo-healthy synthesis with pathology disentanglement and adversarial learning T. Xia, A. Chartsias, S.A. Tsaftaris Medical Image Analysis, vol. 64, 2020 Full TextPreprintCode
7. Doing More with Less: A Multitask Deep Learning Approach in Plant Phenotyping A. Dobrescu, M.V. Giuffrida, S.A. Tsaftaris Frontiers in Plant Science, 11:141 Full TextCode
8. Blind Inpainting of Large-scale Masks of Thin Structures with Adversarial and Reinforcement Learning H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris TBA, submitted PreprintCode
9. Learning to synthesise the ageing brain without longitudinal data T. Xia, A. Chartsias, C. Wang, S.A. Tsaftaris TBA, submitted PreprintCode
10. Disentangle, align and fuse for multimodal and zero-shot image segmentation A. Chartsias, G. Papanastasiou, C. Wang, S. Semple, D. Newby, R. Dharmakumar, S.A. Tsaftaris IEEE Transactions on Medical Imaging, Volume: 40, Issue: 3, March 2021 Full TextPreprintCode
11. Unsupervised Rotation Factorization in Restricted Boltzmann Machines V. Giuffrida, S.A. Tsaftaris IEEE Transactions on Image Processing, vol. 29, no. 1, pp. 2166-2175, 2020 Full TextPDFCode
12. Disentangled Representation Learning in Cardiac Image Analysis A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris Medical Image Analysis, vol. 58, 2019 Full TextPreprintCode
13. Multimodal MR Synthesis via Modality-Invariant Latent Representation A. Chartsias, T. Joyce, V. Giuffrida, and S. A. Tsaftaris IEEE Transactions on Medical Imaging, vol. 37, no. 3, pp. 803-814, 2018 Full TextPDFCode
14. Metrics for Exposing the Biases of Content-Style Disentanglement X. Liu, S. Thermos, G. Valvano, A. Chartsias, A.Q. O'Neil, S.A. Tsaftaris submitted PreprintCode
15. INSIDE: Steering Spatial Attention with Non-Imaging Information in CNNs G. Jacenków, A.Q. O'Neil, B. Mohr, S.A. Tsaftaris MICCAI 2020 Full TextPreprintCode
16. Disentangled Representations for Domain-generalized Cardiac Segmentation X. Liu, S. Thermos, A. Chartsias, A.Q. O'Neil, S.A. Tsaftaris MICCAI 2020, STACOM: Statistical Atlases and Computational Modelling of the Heart PreprintCode
17. Max-Fusion U-Net for Multi-Modal Pathology Segmentation with Attention and Dynamic Resampling H. Jiang, C. Wang, A. Chartsias, S.A. Tsaftaris MICCAI 2020, MyoPS: Multi-sequence CMR based Mycardial Pathology Segmentation Challenge PreprintCode
18. Semi-supervised Pathology Segmentation with Disentangled Representations H. Jiang, A. Chartsias, X. Zhang, G. Panastasiou, S. Semple, M. Dweck, D. Semple, R. Dharmakumar, S.A. Tsaftaris MICCAI 2020, DART: Domain Adaptation and Representation Transfer PreprintCode
19. Consistent Brain Ageing Synthesis T. Xia, A. Chartsias, S.A. Tsaftaris MICCAI 2019 PDFCode
20. Multimodal cardiac segmentation using disentangled representations A. Chartsias, G. Papanastasiou, C. Wang, C. Stirrat, S. Semple, D. Newby, R. Dharmakumar, S.A. Tsaftaris MICCAI 2019, STACOM: Statistical Atlases and Computational Models of the Heart PDFCode
21. Temporal Consistency Objectives Regularize the Learning of Disentangled Representations G. Valvano, A. Chartsias, A. Leo, S.A. Tsaftaris MICCAI 2019, DART: Domain Adaptation and Representation Transfer PreprintCode
22. Adversarial Pseudo Healthy Synthesis Needs Pathology Factorization T. Xia, A. Chartsias, S.A. Tsaftaris MIDL 2019 Full TextCode
23. Factorised spatial representation learning: application in semi-supervised myocardial segmentation A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris MICCAI 2018 PreprintCode
24. Robust Multi-Modal MR Image Synthesis T. Joyce, A. Chartsias, S.A. Tsaftaris MICCAI 2017 PDFCode
25. Leveraging multiple datasets for deep leaf counting A. Dobrescu, M.V. Giuffrida, S.A. Tsaftaris ICCV 2017, CVPPP: Computer Vision Problems in Plant Phenotyping PDFCode
Platforms
1. Phenotiki Open source open hardware platform for affordable plant phenotyping, as of now has been downloaded by 100 users and is actively used by 30 labs in the world. Full TextWebsite
Datasets
1. The PRL – CVPPP Dataset A collection of annotated data for computer vision research in plant phenotyping, as of now it has been downloaded 3000 times, and cited 54 times. Full TextWebsite
2. The CLEVR-Seg Dataset Extension of the CLEVR dataset with segmentation masks and per-object attributes. Full TextCodeWebsite