Publications
The following is a chronologically sorted but possibly incomplete publication list.
2020
1. Semi-supervised Pathology Segmentation with Disentangled Representations
H. Jiang, A. Chartsias, X. Zhang, G. Panastasiou, S. Semple, M. Dweck, D. Semple, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2020, DART: Domain Adaptation and Representation Transfer
Preprint Code
2. Max-Fusion U-Net for Multi-Modal Pathology Segmentation with Attention and Dynamic Resampling
H. Jiang, C. Wang, A. Chartsias, S.A. Tsaftaris
MICCAI 2020, MyoPS: Multi-sequence CMR based Mycardial Pathology Segmentation Challenge
Preprint Code
3. Metrics for Exposing the Biases of Content-Style Disentanglement
X. Liu, S. Thermos, G. Valvano, A. Chartsias, A.Q. O'Neil, S.A. Tsaftaris
submitted
Preprint Code
4. Disentangled Representations for Domain-generalized Cardiac Segmentation
X. Liu, S. Thermos, A. Chartsias, A.Q. O'Neil, S.A. Tsaftaris
MICCAI 2020, STACOM: Statistical Atlases and Computational Modelling of the Heart
Preprint Code
5. INSIDE: Steering Spatial Attention with Non-Imaging Information in CNNs
G. Jacenków, A.Q. O'Neil, B. Mohr, S.A. Tsaftaris
MICCAI 2020
Full Text Preprint Code
6. Have you forgotten? A method to assess if machine learning models have forgotten data
X. Liu, S.A. Tsaftaris
MICCAI 2020
Preprint
7. Weakly Supervised Segmentation with Multi-scale Adversarial Attention Gates
G. Valvano, A. Leo, S.A. Tsaftaris
TBA, submitted
Preprint
8. Pseudo-healthy synthesis with pathology disentanglement and adversarial learning
T. Xia, A. Chartsias, S.A. Tsaftaris
Medical Image Analysis, vol. 64, 2020
Full Text Preprint Code
9. Teacher-Student chain for efficient semi-supervised histology image classification
S. Shaw, M. Pajak, A. Lisowska, S.A. Tsaftaris, A.Q. O'Neil
ICLR 2020, AI for Affordable Healthcare (AI4AH)
Preprint
10. Deep Learning for Cardiac Image Segmentation: A Review
C. Chen, C. Qin, H. Qiu, G. Tarroni, J. Duan, W. Bai, D. Rueckert
Frontiers in Cardiovascular Medicine, vol. 7, 2020
Full Text
11. Doing More with Less: A Multitask Deep Learning Approach in Plant Phenotyping
A. Dobrescu, M.V. Giuffrida, S.A. Tsaftaris
Frontiers in Plant Science, 11:141
Full Text Code
12. Tail of Distribution GAN: GAN-Based Boundary of Distribution Formation
N. Dionelis, M. Yaghoobi, S.A. Tsaftaris
SSPD 2020
13. Boundary of Distribution Support Generator (BDSG): Sample Generation on the Boundary
N. Dionelis, M. Yaghoobi, S.A. Tsaftaris
IEEE ICIP 2020
2019
14. Blind Inpainting of Large-scale Masks of Thin Structures with Adversarial and Reinforcement Learning
H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
TBA, submitted
Preprint
15. Learning to synthesise the ageing brain without longitudinal data
T. Xia, A. Chartsias, C. Wang, S.A. Tsaftaris
TBA, submitted
Preprint Code
16. Disentangle, align and fuse for multimodal and zero-shot image segmentation
A. Chartsias, G. Papanastasiou, C. Wang, S. Semple, D. Newby, R. Dharmakumar, S.A. Tsaftaris
TBA, submitted
Preprint Code
17. Ontological attention ensembles for capturing semantic concepts in ICD code prediction from clinical text
M. Falis, M. Pajak, A. Lisowska, P. Schrempf, L. Deckers, S. Mikhael, S.A. Tsaftaris, A.Q. O'Neil
EMNLP-IJCNLP 2019, Tenth International Workshop on Health Text Mining and Information Analysis
Full Text
18. Unsupervised Rotation Factorization in Restricted Boltzmann Machines
V. Giuffrida, S.A. Tsaftaris
IEEE Transactions on Image Processing, vol. 29, no. 1, pp. 2166-2175, 2020
Full Text PDF Code
19. Temporal Consistency Objectives Regularize the Learning of Disentangled Representations
G. Valvano, A. Chartsias, A. Leo, S.A. Tsaftaris
MICCAI 2019, DART: Domain Adaptation and Representation Transfer
Preprint Code
20. TPSDicyc: Improved Deformation Invariant Cross-domain Medical Image Synthesis
C. Wang, G. Papanastasiou, S.A. Tsaftaris, G. Yang, C. Gray, D. Newby, G. Macnaught, T. MacGillivray
MICCAI 2019, MLMIR: Machine Learning for Medical Image Reconstruction
Full Text PDF
21. Multimodal cardiac segmentation using disentangled representations
A. Chartsias, G. Papanastasiou, C. Wang, C. Stirrat, S. Semple, D. Newby, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2019, STACOM: Statistical Atlases and Computational Models of the Heart
PDF Code
22. Consistent Brain Ageing Synthesis
T. Xia, A. Chartsias, S.A. Tsaftaris
MICCAI 2019
PDF Code
23. Disentangled Representation Learning in Cardiac Image Analysis
A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris
Medical Image Analysis, vol. 58, 2019
Full Text Preprint Code
24. Conditioning Convolutional Segmentation Architectures with Non-Imaging Data
G. Jacenków, A. Chartsias, B. Mohr, S.A. Tsaftaris
MIDL 2019
Full Text
25. Adversarial Pseudo Healthy Synthesis Needs Pathology Factorization
T. Xia, A. Chartsias, S.A. Tsaftaris
MIDL 2019
Full Text Code
26. Adversarial Large-Scale Root Gap Inpainting
H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
CVPR 2019, CVPPP: Computer Vision Problems in Plant Phenotyping
Full Text
27. Leaf Counting Without Annotations Using Adversarial Unsupervised Domain Adaptation
M.V. Giuffrida, A. Dobrescu, P. Doerner, S.A. Tsaftaris
CVPR 2019, CVPPP: Computer Vision Problems in Plant Phenotyping
Full Text
28. Accurate needle-free assessment of myocardial oxygenation for ischemic heart disease in canines using magnetic resonance imaging
H.J. Yang, I. Oksuz, D. Dey, J. Sykes, M. Klein, J. Butler, M. S. Kovacs, O. Sobczyk, I. Cokic, P. J. Slomka, X. Bi, D. Li, M. Tighiouart, S.A. Tsaftaris, F.S. Prato, J. A. Fisher and R. Dharmakumar
Science Translational Medicine, vol. 11, Issue 494, eaat4407, 2019
Full Text
29. Affordable and robust phenotyping framework to analyse root system architecture of soil-grown plants
T. Bontpart, C. Concha, M.V. Giuffrida, I. Robertson, K. Admkie, T. Degefu, N. Girma, K. Tesfaye, T. Haileselassie, A. Fikre, M. Fetene, S.A. Tsaftaris, P. Doerner
TBA, submitted
Preprint
30. The Generalized Complex Kernel Least-Mean-Square Algorithm
R. Boloix-Tortosa, J.J. Murillo-Fuentes, S.A. Tsaftaris
IEEE Transactions on Signal Processing, vol. 67, no. 20, pp. 5213 - 5222, 2019
Full Text Preprint PDF
31. Doing more with less: semi-supervised cardiac segmentation with a fraction of labeled images
A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris
SCMR 2019
32. Sharing the Right Data Right: A Symbiosis with Machine Learning
S.A Tsaftaris, H. Scharr
Trends in Plant Science, vol. 24, no. 2, pp. 99-102, 2019
Full Text Website
2018
33. Factorised spatial representation learning: application in semi-supervised myocardial segmentation
A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2018
Preprint Code
34. Cardiovascular Magnetic Resonance Assessment of Myocardial Oxygenation
R. Dharmakumar, S.A. Tsaftaris, H.-J. Yang, D. Li
Cardiovascular Magnetic Resonance (Third Edition), W. Manning, D. Manning, Elsevier, 2018-09-10
Full Text
35. Brain lesion segmentation through image synthesis and outlier detection
C. Bowles, C. Qin, R. Guerrero, R. Gunn, A. Hammers, D.A. Dickie, M. Valdés Hernández, J. Wardlaw, D. Rueckert
NeuroImage: Clinical, vol. 16, 2017
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36. Root Gap Correction with a Deep Inpainting Model
H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
BMVC 2018, CVPPP: Computer Vision Problems in Plant Phenotyping
Full Text
37. Pheno-Deep Counter: a unified and versatile deep learning architecture for leaf counting
M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
The Plant Journal, In Press. 2018
Full Text PDF
38. Convolutional Recurrent Neural Networks for Dynamic MR Image Reconstruction
C. Qin, J. Schlemper, J. Caballero, A.N. Price, J.V. Hajnal, D. Rueckert
IEEE Transactions on Medical Imaging, vol. 38, 2019
Full Text
39. Deep Multi-Class Segmentation Without Ground-Truth Labels
T. Joyce, A. Chartsias, S.A. Tsaftaris
MIDL 2018
Full Text
40. Editorial for Special Issue on Reproducible Research
Ö.N. Gerek, B. Boashash, M. Leszczuk, S.A. Tsaftaris, W. Armour, D. Wallom
Digital Signal Processing, vol. 77, pp. 1-4, 2018
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41. Editorial for Simulation and Synthesis in Medical Imaging
A. Frangi, S.A. Tsaftaris, J. Prince
IEEE Transactions on Medical Imaging, vol. 37, no. 3, pp. 673-679, 2018
Full Text
42. Citizen crowds and experts: observer variability in image-based plant phenotyping
V. Giuffrida, F. Chen, H. Scharr, S.A. Tsaftaris
Plant Methods, vol. 14, no. 12, 2018
Full Text Website
2017
43. White matter hyperintensity and stroke lesion segmentation and differentiation using convolutional neural networks
R. Guerrero, C. Qin, O. Oktay, C. Bowles, L. Chen, R. Joules, R. Wolz, M.C. Valdés-Hernández, D.A. Dickie, J. Wardlaw, D. Rueckert
NeuroImage: Clinical, vol. 17, 2018
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44. A large margin algorithm for automated segmentation of white matter hyperintensity
C. Qin, R. Guerrero, C. Bowles, L. Chen, D.A. Dickie, M. del C. Valdes-Hernandez, J. Wardlaw, D. Rueckert
Pattern Recognition, vol. 77, 2018
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45. A 'Do-It-Yourself' phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants
A. Dobrescu, L.C.T. Scorza, S.A. Tsaftaris, and A. McCormick
Plant Methods, 13:95, 2017
Full Text PDF
46. ARIGAN: Synthetic Arabidopsis Plants using Generative Adversarial Network
M.V. Giuffrida, H. Scharr, S.A. Tsaftaris
ICCV 2017, CVPPP: Computer Vision Problems in Plant Phenotyping
PDF
47. Leveraging multiple datasets for deep leaf counting
A. Dobrescu, M.V. Giuffrida, S.A. Tsaftaris
ICCV 2017, CVPPP: Computer Vision Problems in Plant Phenotyping
PDF Code
48. Multimodal MR Synthesis via Modality-Invariant Latent Representation
A. Chartsias, T. Joyce, V. Giuffrida, and S. A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 37, no. 3, pp. 803-814, 2018
Full Text PDF Code
49. Simulation and Synthesis in Medical Imaging: Second International Workshop, SASHIMI 2017
S.A. Tsaftaris, A. Gooya, A Frangi, J. Prince
SASHIMI 2017, Held in Conjunction with MICCAI 2017, Quebec City, Lecture Notes in Computer Science, vol. 10557
Full Text Website
50. Joint Myocardial Registration and Segmentation of Cardiac BOLD MRI
I. Oksuz, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2017, STACOM: Statistical Atlases and Computational Models of the Heart
PDF
51. Adversarial Image Synthesis for Unpaired Multi-Modal Cardiac Data
A. Chartsias, T. Joyce, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2017, SASHIMI: Simulation and Synthesis in Medical Imaging
PDF
52. Robust Multi-Modal MR Image Synthesis
T. Joyce, A. Chartsias, S.A. Tsaftaris
MICCAI 2017
PDF Code
53. Unsupervised Myocardial Segmentation for Cardiac BOLD
I. Oksuz, A. Mukhopadhyay, R. Dharmakumar and S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 36, no. 11, pp. 2228-2238, 2017
Full Text PDF
54. Arterial CO2 Can Potentiate Myocardial Blood Flow to the Same Extent as Adenosine
H.J. Yang, D. Dey, J. Sykes, M. Klein, J. Butler, M. Kovacs, O. Sobczyk, B. Sharif, X. Bi, A. Kali, I. Cokic, R. Tang, R. Yumul, A. Conte, S.A. Tsaftaris, M. Tighiouart, D. Li, P.J. Slomka, D. Berman, F. Prato, J. Fisher, R. Dharmakumar
Journal of Nuclear Medicine, vol. 58. no. 6, pp. 953-960, 2017
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55. Statistical shape modeling of the left ventricle: myocardial infarct classification challenge
A. Suinesiaputra, P. Ablin, X. Alba, M. Alessandrini, J. Allen, W. Bai, S. Cimen, P. Claes, B. Cowan, J. D''hooge, N. Duchateau, J. Ehrhardt, A. Frangi, A. Gooya, V. Grau, K. Lekadir, A. Lu, A. Mukhopadhyay, I. Oksuz, N. Parajuli, X. Pennec, M. Pereanez, C. Pinto, P. Piras, M.M. Rohe, D. Rueckert, D. Saring, M. Sermesant, K. Siddiqi, M. Tabassian, L. Teresi, S.A. Tsaftaris, M. Wilms, A. Young, X. Zhang, P. Medrano-Gracia
IEEE Journal of Biomedical and Health Informatics, vol. 22, no. 2, pp. 503-515, 2018
Full Text PDF
56. Phenotiki: An open software and hardware platform for affordable and easy image-based phenotyping of rosette-shaped plants
M. Minervini, V. Giuffrida, P. Perata, S.A. Tsaftaris
The Plant Journal, vol. 90, no. 1, pp. 204-216, 2017
Full Text
2016
57. Machine Learning for Plant Phenotyping Needs Image Processing
S.A. Tsaftaris, M. Minervini, H. Scharr
Trends in Plant Science, vol. 21, no. 12, pp. 989-991, 2016
Full Text PDF
58. Whole Image Synthesis using a Deep Encoder-Decoder Network
V. Sevetlidis, M.V. Giuffrida, S.A. Tsaftaris
MICCAI 2016, SASHIMI: Simulation and Synthesis in Medical Imaging
PDF
59. Finely-grained annotated datasets for image-based plant phenotyping
M. Minervini, A. Fischbach, H. Scharr, S. A. Tsaftaris
Pattern Recognition Letters, vol. 81, no. 1, pp. 80-89, 2016
Full Text PDF Website
60. A Semi-supervised Large Margin Algorithm for White Matter Hyperintensity Segmentation
C. Qin, R. Moreno, C. Bowles, C. Ledig, P. Scheltens, F. Barkhof, H. Rhodius-Meester, B. Tijms, A.W. Lemstra, W.M. van der Flier, B. Glocker, D. Rueckert
MICCAI 2016, MLMI: Machine Learning in Medical Imaging
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61. Pseudo-healthy Image Synthesis for White Matter Lesion Segmentation
C. Bowles, C. Qin, C. Ledig, R. Guerrero, R. Gunn, A. Hammers, E. Sakka, D.A. Dickie, M. Valdés Hernández, N. Royle, J. Wardlaw, H. Rhodius-Meester, B. Tijms, A.W. Lemstra, W. van der Flier, F. Barkhof, P. Scheltens, D. Rueckert
MICCAI 2016, SASHIMI: Simulation and Synthesis in Medical Imaging
Full Text
62. Simulation and Synthesis in Medical Imaging: First International Workshop, SASHIMI 2016
S.A. Tsaftaris, A. Gooya, A Frangi, J. Prince
SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, Lecture Notes in Computer Science, vol. 9968
Full Text Website
63. Rotation-Invariant Restricted Boltzmann Machine using Shared Gradient Filters
M.V. Giuffrida, S.A. Tsaftaris
ICANN 2016
Preprint
64. Semi-automated registration-based anatomical labelling, voxel based morphometry and cortical thickness mapping of the mouse brain
M. Pagani, M. Damiano, A. Galbusera, S.A. Tsaftaris, A. Gozzi
Journal of Neuroscience Methods, vol. 267, pp. 62-73, 2016
Full Text PDF
65. Editorial for Special issue on computer vision and image analysis in plant phenotyping
H. Scharr, H. Dee, A.P. French, S.A. Tsaftaris
Machine Vision and Applications, vol. 27, pp. 607-609, 2016
Full Text
66. Theta-RBM: Unfactored Gated Restricted Boltzmann Machine for Rotation-Invariant Representations
M.V. Giuffrida, S.A. Tsaftaris
Preprint
67. Supporting Autonomic Management of Clouds: Service Clustering with Random Forest
R. B. Uriarte, S.A. Tsaftaris, F. Tiezzi
IEEE Transactions on Network and Service Management, vol. 13, no. 3, pp. 595-607, 2016
Full Text PDF
2015
68. Classification-aware distortion metric for HEVC intra coding
M. Minervini, S. A. Tsaftaris
VCIP 2015
PDF
69. Leaf segmentation in plant phenotyping: A collation study
H. Scharr, M. Minervini, A. P. French, C. Klukas, D. M. Kramer, X. Liu, I. Luengo Muntión, J.-M. Pape, G. Polder, D. Vukadinovic, X. Yin, S.A. Tsaftaris
Machine Vision and Applications, vol. 27, pp. 585-606, 2016
Full Text PDF
70. Supervised Learning of Functional Maps for Infarct Classification
A. Mukhopadhyay, I. Oksuz, S.A. Tsaftaris
MICCAI 2015, STACOM: Statistical Atlases and Computational Models of the Heart
Full Text PDF
71. Unsupervised myocardial segmentation for cardiac MRI
A. Mukhopadhyay, I. Oksuz, M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2015
Full Text PDF
72. Dictionary Learning Based Image Descriptor for Myocardial Registration of CP BOLD MR
I. Oksuz, A. Mukhopadhyay, M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2015
Full Text PDF
73. An interactive tool for semi-automated leaf annotation
M. Minervini, M.V. Giuffrida, S.A. Tsaftaris
BMVC 2015, CVPPP: Computer Vision Problems in Plant Phenotyping
PDF
74. Learning to Count Leaves in Rosette Plants
M.V. Giuffrida, M. Minervini, S.A. Tsaftaris
BMVC 2015, CVPPP: Computer Vision Problems in Plant Phenotyping
PDF
75. The Significance of Image Compression in Plant Phenotyping Applications
M. Minervini, H. Scharr, S.A. Tsaftaris
Functional Plant Biology, vol. 42, no. 10, pp. 971-988, 2015
Full Text PDF
76. Dictionary-driven Ischemia Detection from Cardiac Phase-Resolved Myocardial BOLD MRI at Rest
M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 35, no. 1, pp. 282-293, 2016
Full Text PDF
77. Computationally efficient data and application driven color transforms for the compression and enhancement of images and video
M. Minervini, C. Rusu, S. A. Tsaftaris
Color Image and Video Enhancement, E. Celebi, M. Lecca, B. Smolka, Springer, 2015-08-14
PDF
78. Data-Driven Feature Learning for Myocardial Segmentation of CP-BOLD MRI
A. Mukhopadhyay, I. Oksuz, M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
FIMH 2015
PDF
79. Image Analysis: the new bottleneck in plant phenotyping
M. Minervini, H. Scharr, S.A. Tsaftaris
IEEE Signal Processing Magazine, vol. 32, no. 4, pp. 126-131, 2015
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80. Dictionary-based Support Vector Machines for Unsupervised Ischemia Detection at Rest with CP-BOLD Cardiac MRI
M. Bevilacqua, A. Mukhopadhyay, I. Oksuz, C. Rusu, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2015
81. Data Driven Feature Learning For Representation of Myocardial BOLD MR Images
A. Mukhopadhyay, M. Bevilacqua, I. Oksuz, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2015
82. Effect of BOLD Contrast on Myocardial Registration
I. Oksuz, A. Mukhopadhyay, M. Bevilacqua, H.-J. Yang, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2015
83. Service Clustering for Autonomic Clouds Using Random Forest
R.B. Uriarte, S.A. Tsaftaris, F. Tiezzi
IEEE/ACM 2015
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2014
84. Unsupervised and Supervised Approaches to Color Space Transformation for Image Coding
M. Minervini, C. Rusu, S.A. Tsaftaris
ICIP 2014
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85. Structured Dictionaries for Ischemia Estimation in Cardiac BOLD MRI at Rest
C. Rusu, S.A. Tsaftaris
MICCAI 2014
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86. Image based plant phenotyping with incremental learning and active contours
M. Minervini, M.M. Abdelsamea, S.A. Tsaftaris
Ecological Informatics Journal, Special Issue on Multimedia in Ecology and Environment, vol. 23, pp. 35-48, 2014
Full Text PDF
87. Electrical Characteristics of Chronic Iron-Laden Myocardial Infarcts: Initial Study in Canine Hearts
I. Cokic, A. Kali, X. Wang, H. Yang, R.L. Tang, A. Thajudeen, M. Shehata, A.M. Amorn, E. Liu, B. Stewart, N. Bennett, D. Harlev, S.A. Tsaftaris, W.M. Jackman, S.S. Chugh, R. Dharmakumar
ISMRM 2014
88. Probing Myocardial Blood Oxygenation Reserve of Canines with Controlled Hypercapnia using T2-prepared BOLD CMR
H. Yang, R. Yumul, R.L. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, B. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, J. Min, D.S. Berman, A.H. Conte, J. Fisher, R. Dharmakumar
ISMRM 2014
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89. Unsupervised Ischemia Detection at Rest with CP-BOLD Cardiac MRI: A Simulation Study Employing Independent Component Analysis
R. Morisi, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2014
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90. Temporal and Spatial Variation of Baseline Myocardial BOLD Signal Intensity in Cardiac Phase-Resolved BOLD MRI: A Potentially Revealing Insight into Dynamic Changes in Myocardial Oxygenation
D. Boschetto, C. Rusu, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2014
91. A Synthetic Generator of Myocardial Blood-Oxygen-Level-Dependent MRI Timeseries with Structural Sparse Decomposition Modeling
C. Rusu, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2014
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92. Impact of Chronic Iron Deposition Following Myocardial Infarction on Gross Electrical Characteristics
I. Cokic , Kali A, Yang H, Tang RL, S.A. Tsaftaris, R. Dharmakumar
HRS 2014
93. Assessment of Myocardial Reactivity to Controlled Hypercapnia with Free-breathing T2-prepared Cardiac Blood-Oxygen-Level-Dependent MR Imaging
H.-S. Yang, R. Yumul, R. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, D. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, A.H. Conte, J.A. Fisher, R. Dharmakumar
Radiology, vol. 272, no. 2, pp. 397-406, 2014
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94. Assessment of Controlled Iso-Oxic Hypercapnic Stimulation of Myocardial Blood Flow using Oxygen Dependent Cardiac Magnetic Resonance Imaging
H. Yang, R. Yumul, R.L. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, B. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, J. Min, D.S. Berman, A.H. Conte, J. Fisher, R. Dharmakumar
ACC 2014
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95. COMT genetic reduction produces sexually-divergent effects on cortical anatomy and working memory in mice and humans
S. Sannino, A. Gozzi, A. Cerasa, D. Scheggia, F. Manago, M. Damiano, A. Galbusera, D. De Pietri Tonelli, A. Bifone, S.A. Tsaftaris, D.R. Weinberger, G. Spalletta, F. Papaleo
Cerebral Cortex, vol. 25, no. 9, pp. 2529-2541, 2015
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96. Synthetic Generation of Myocardial Blood-Oxygen-Level-Dependent MRI Time Series via Structural Sparse Decomposition Modeling
C. Rusu, R. Morisi, D. Boschetto, R. Dharmakumar, S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 33, no. 7, pp. 1422-1433, 2014
Full Text Preprint PDF
97. Dominant $\beta$-catenin mutations cause intellectual disability with recognizable syndromic features
V. Tucci, T. Kleefstra, A. Hardy, I. Heise, S. Maggi, M. Willemsen, H. Hilton, C. Esapa, M. Simon, M.-T. Buenavista, L. Vizor, L. Dodero, S.A. Tsaftaris, R. Romero, W.M. Nillesen, L. Peart-Vissers, M. Kempers, A. Vulto-Van Siflhout, Z. Iqbal, M. Orlando, A. Maccione, G. Lassi, P. Farisello, A. Constestabile, T. Nieus, A. Raimondi, B. Greco, D. Cantatore, L. Gasparini, L. Berdondini, A. Bifone, A. Gozzi, S. Wells, P.M. Nolan
Journal of Clinical Investigation, vol. 124, no. 4, pp. 1468-82, 2014
Full Text Preprint
98. Large-Scale Analysis of Neuroimaging Data on Commercial Clouds with Content-Aware Resource Allocation Strategies
M. Minervini, C. Rusu, M. Damiano, V. Tucci, A. Bifone, A. Gozzi, S.A. Tsaftaris
International Journal of High Performance Computing Applications, Vol 29, Issue 4, 2015
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99. Probing Myocardial Blood Oxygenation Reserve with Controlled Hypercapnia using BOLD CMR
H. Yang, R. Yumul, R.L. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, B. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, J. Min, D.S. Berman, A.H. Conte, J. Fisher, R. Dharmakumar
SCMR 2014
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100. A scientist's guide to cloud computing
S.A. Tsaftaris
Computing in Science and Engineering, vol. 16, no. 1, pp. 70-76, 2014
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2013
101. Explicit shift-invariant dictionary learning
C. Rusu, D. Dumitrescu, S.A. Tsaftaris
IEEE Signal Processing Letters, vol. 21, no. 1, pp. 6-9, 2014
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102. Neuroimaging Evidence of Major Morpho-Anatomical and Functional Abnormalities in the BTBR T+TF/J Mouse Model of Autism
L. Dodero, M. Damiano, S.A. Tsaftaris, A. Galbusera, A. Bifone, M. L. Scattoni, A. Gozzi
PLoS One, vol. 8, no. 10, pp. 76655, 2013
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103. Iron Deposition Following Chronic Myocardial Infarction as a Substrate for Cardiac Electrical Anomalies: Initial Findings in a Canine Model
I. Cokic, A. Kali, X. Wang, H.-J. Yang, R. L Tang, A. Thajudeen, M Shehata, A. M. Amorn, L. Enzhao, B. Stewart, N. Bennett, D. Harlev, S.A. Tsaftaris, W.M. Jackman, S. Chugh, R. Dharmakumar
PLoS One, vol. 8, no. 9, pp. 73193, 2013
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104. Estimation of Scribble Placement for Painting Colorization
C. Rusu, S.A. Tsaftaris
ISPA 2013
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105. Learning Computationally Efficient Approximations of Complex Image Segmentation Metrics
M. Minervini, C. Rusu, S.A. Tsaftaris
ISPA 2013
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106. Active Contour Model driven by Globally Signed Region Pressure Force
M.M. Abdelsamea, S.A. Tsaftaris
DSP 2013
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107. Application-Aware Image Compression for Low Cost and Distributed Plant Phenotyping
M. Minervini, S.A. Tsaftaris
DSP 2013
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108. A novel visualization tool for art history and conservation: automated colorization of black and white archival photographs of works of art
S.A. Tsaftaris, F. Casadio, J.-L. Andral, A.K. Katsaggelos
Studies in Conservation, vol. 59, no. 3, pp. 125-135, 2014
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109. Application-Aware Approach to Compression and Transmission of H.264 Encoded Video for Automated and Centralized Transportation Surveillance
Z. Chen, E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
IEEE Transactions on Intelligent Transportation Systems, vol. 14, no. 4, pp. 2002-2007, 2013
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110. Neuroimaging Evidence of Major Morpho-Anatomical and Functional Abnormalities in the BTBR T+TF/J Mouse Model of Autism
L. Dodero, F. Sforazzini, A. Galbusera, M. Damiano, S.A. Tsaftaris, A. Bifone, M. L. Scattoni, A. Gozzi
IMFAR 2013
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111. Chronic Iron Deposition following Acute Hemorrhagic Myocardial Infarction: A Cardiovascular Magnetic Resonance Study
A. Kali, A. Kumar, I. Cokic, R. Tang, S.A. Tsaftaris, M. Friedrich, R. Dharmakumar
AHA Scientific Sessions 2012
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112. Chronic Manifestation of Post-Reperfusion Intramyocardial Hemorrhage as Regional Iron Deposition - A Cardiovascular MR Study with Ex-vivo Validation
A. Kali, A. Kumar, I. Cokic, R. Yang, S.A. Tsaftaris, R. Tang, D. Li, M.G. Friedrich, R. Dharmakumar
Circulation Cardiovascular Imaging, vol. 6, no. 2, pp. 218-228, 2013
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113. Acute Reperfusion Intramyocardial Hemorrhage Leads to Regional Chronic Iron Deposition in the Heart
A. Kali, I. Cokic, A. Kumar, S.A. Tsaftaris, R. Tang, M. Friedrich, R. Dharmakumar
SCMR 2013
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114. Acute Hemorrhagic Myocardial Infarction Leads to Localized Chronic Iron Deposition: A CMR Study
A. Kali, I. Cokic, A. Kumar, S.A. Tsaftaris, R. Tang, M. Friedrich, R. Dharmakumar
ISMRM 2013
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2012
115. Detecting ACS and Identifying Acute Ischemic Territories with Cardiac Phase-Resolved BOLD MRI at Rest
S.A. Tsaftaris, X. Zhou, R. Tang, J. Min, D. Li, R. Dharmakumar
ISMRM 2012
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116. Detecting Myocardial Ischemia at Rest with Cardiac Phase-Resolved BOLD CMR
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
Circulation Cardiovascular Imaging, vol. 6, no. 2, pp. 311-319, 2013
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117. Mouse Neuroimaging Phenotyping in the Cloud
M. Minervini, M. Damiano, V. Tucci, A. Bifone, A. Gozzi, S.A. Tsaftaris
IPTA 2012
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118. Tracking-Optimal Error Control Schemes for H.264 Compressed Video for Vehicle Surveillance
Z. Chen, E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
EUSIPCO 2012
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119. Myocardial Blood-Oxygen-Level-Dependent Magnetic Resonance Imaging with Balanced Steady-State Free Precession Imaging Approaches
R. Dharmakumar, S.A. Tsaftaris, D. Li
The Open Medical Imaging Journal, vol. 6, pp. 31-38, 2012
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120. Ischemic Extent as a Biomarker for Characterizing Severity of Coronary Artery Stenosis with Blood Oxygen-Sensitive Cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
Journal of Magnetic Resonance Imaging, vol. 35, no. 6, pp. 1338-1348, 2012
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2011
121. Detecting Myocardial Ischemic Territories in the Setting of Acute Coronary Obstructions at Rest with Cardiac Phase-Resolved Blood Oxygen Level Dependent (CP-BOLD) MRI
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
AHA Scientific Sessions 2011
122. Low-Complexity Video Compression for Automated Transportation Surveillance
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
IEEE Transactions on Circuits and Systems for Video Technology, vol. 21, no. 10, pp. 1378-1389, 2011
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123. Channel Protection for H.264 Compression in Transportation Video Surveillance Applications
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
ICIP 2011
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124. Tracking-Optimized Quantization for H.264 Compression in Transportation Video Surveillance Applications
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
ICIP 2011
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125. PHIDIAS: Plant Phenotyping with a High-throughput, Intelligent, Distributed, and Integrated Analysis System
S.A. Tsaftaris
IPPS 2011
126. An Area-based Imaging Biomarker for the Characterization of Coronary Artery Stenosis with Blood Oxygen-Sensitive MRI
S.A. Tsaftaris, R. Tang, X. Zhou, D. Li, R. Dharmakumar
ISMRM 2011
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127. Detecting Myocardial Ischemia at Rest with Cardiac Phase-Resolved BOLD MRI: Early Findings
S.A. Tsaftaris, V. Rundell, X. Zhou, Y. Liu, R. Tang, D. Li, R. Dharmakumar
ISMRM 2011
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128. Colorizing a Masterpiece
S.A. Tsaftaris, K. Lister, I. Fiedler, F. Casadio, A.K. Katsaggelos
IEEE Signal Processing Magazine, vol. 28, no. 3, pp. 113-119, 2011
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129. T2-weighted STIR Imaging of Myocardial Edema Associated with Ischemia-Reperfusion Injury: The Influence of Proton Density Effect on Image Contrast
X. Zhou, V. Rundell, Y. Liu, R. Tang, R. Klein, S. Shah, S. Zuehlsdorff, S.A. Tsaftaris, D. Li, R. Dharmakumar
Journal of Magnetic Resonance Imaging, vol. 33, no. 4, pp. 962-967, 2011
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130. A Fully Automated Statistical Method for Characterization of Flow Artifact Presence in cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Dharmakumar
SCMR 2011
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131. An Area-based Imaging Biomarker for Characterizing Coronary Artery Stenosis with Myocardial BOLD MRI
S.A. Tsaftaris, X. Zhou, D. Li, R. Dharmakumar
SCMR 2011
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132. La Joie De Vivre: The Evolution of a Masterpiece
S.A. Tsaftaris, F. Casadio, G. Gautier, J.-L. Andral, A.K. Katsaggelos
Picasso Express, J.L. Andral, , 2011-01-01
2010
133. Tracking-Optimal Pre- and Post-processing for H.264 Compression in Traffic Video Surveillance Applications
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
ICECS 2010
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134. Quantization Optimized H.264 Encoding for Traffic Video Tracking Applications
E. Soyak, S.A. Tsaftaris, A.K. Katsaggelos
ICIP 2010
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135. Video Anomaly Detection in Spatiotemporal Context
F. Jiang, J. Yuan, S.A. Tsaftaris, A.K. Katsaggelos
ICIP 2010
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136. On the origin of myocardial edema contrast in T2-STIR images
X. Zhou, V. Rundell, Y. Liu, R. Tang, R. Klein, S. Giri, S. Shah, S.A. Tsaftaris, S. Zuehlsdorff, O. Simonetti, D. Li, R. Dharmakumar
ISMRM 2010
137. Myocardial BOLD imaging using flow compensated 2D cine bSSFP
X. Zhou, S.A. Tsaftaris, Y. Liu, R. Tang, R. Klein, S. Zuehlsdorff, D. Li, R. Dharmakumar
ISMRM 2010
138. Unsupervised and Reproducible Image-based Identifi-cation of Cardiac Phases in Cine SSFP MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Dharmakumar
ISMRM 2010
139. Automated synchronization of cardiac phases for myocardial BOLD MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Klein, A. Katsaggelos, R. Dharmakumar
ISMRM 2010
140. Unsupervised reconstruction for ungated ghost angiography by clustering of image features
S.A. Tsaftaris, E. Offerman, R. Edelman, I. Koktzoglou
ISMRM 2010
141. Automated Assessment of Ghost Artifacts in MRI
S.A. Tsaftaris, X. Zhou, R. Dharmakumar
ISMRM 2010
142. A New Quantitative Imaging Biomarker for Identifying Critical Coronary Artery Stenosis with Myocardial BOLD MRI
S.A. Tsaftaris, X. Zhou, D. Li, R. Dharmakumar
ISMRM 2010
143. Dual Contrast Cellular MRI
R. Dharmakumar, Z. Zhang, I. Koktzoglou, S.A. Tsaftaris, D. Li
ISMRM 2010
144. Artifact-reduced two-dimensional cine steady state free precession for myocardial blood-oxygen-level-dependent imaging
X. Zhou, S.A. Tsaftaris, Y. Liu, R. Tang, R. Klein, S. Zuehlsdorff, D. Li, R. Dharmakumar
Journal of Magnetic Resonance Imaging, vol. 31, no. 4, pp. 863-871, 2010
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145. Content-Aware H.264 Encoding for Traffic Video Tracking Applications
E. Soyak, S.A. Tsaftaris, A.K. Katsaggelos
ICASSP 2010
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146. Anomalous Video Event Detection Using Spatiotemporal Context
F. Jiang, J. Yuan, S.A. Tsaftaris, A.K. Katsaggelos
Computer Vision and Image Understanding, vol. 115, no. 3, pp. 323-333, 2011
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147. Fully Automated Reconstruction of Ungated Ghost Magnetic Resonance Angiograms Using Cluster Analysis
S.A. Tsaftaris, E. Offerman, R. Edelman, I. Koktzoglou
Journal of Magnetic Resonance Imaging, vol. 31, no. 3, pp. 655-662, 2010
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148. Contribution to Matisse: Radical Invention, 1913 - 1917
S.A. Tsaftaris, A.K. Katsaggelos
Matisse: Radical Invention, S. D'Alessandro, J. Elderfield, Art Institute of Chicago, 2010-01-01
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2009
149. Dual Contrast Cellular MRI
R. Dharmakumar, Z. Zhang, I. Koktzoglou, S.A. Tsaftaris, D. Li
Molecular Imaging, vol. 8, no. 5, pp. 254-63, 2009
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150. Retrieval Efficiency of DNA-Based Databases of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos
IEEE Transactions on NanoBioscience, vol. 8, no. 3, pp. 259-270, 2009
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151. Plant Phenotyping with Low Cost Digital Cameras and Image Analytics
S.A. Tsaftaris, C. Noutsos
ICSC 2009
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152. Visualization and Tracking of a Conventional Guidewire with Low Flip Angle SSFP Imaging: An Initial Study
R. Dharmakumar, I. Koktzoglou, S.A. Tsaftaris, S. Zuehlsdorff, R. Tang, G. Wright, D. Li
ISMRM 2009
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153. Visualizing and Quantifying Myocardial Oxyge-nation Changes with Statistically Optimal Colormaps
S.A. Tsaftaris, R. Tang, R. Klein, D. Li, R. Dharmakumar
ISMRM 2009
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154. An Intensity Based Statistical Approach for Left Ventricular Localization and Identification of End-Systolic and End-Diastolic Images from Cine Cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Klein, R. Dharmakumar
ISMRM 2009
155. Impact of Temporal Resolution on Cardiac Phase-Resolved Oxygen-Sensitive Myocardial Steady-State Free Precession Imaging
X. Zhou, R. Tang, R. Klein, S.A. Tsaftaris, D. Li, R. Dharmakumar
SCMR 2009
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156. Visualizing Regional Myocardial Oxygenation Changes with Statistically Optimal Colormaps
S.A. Tsaftaris, R. Tang, R. Klein, D. Li, R. Dharmakumar
SCMR 2009
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157. An Automated Method for Left Ventricular Localization and Identification of End-Systolic and End-Diastolic Images from Cine Cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Klein, R. Dharmakumar
SCMR 2009
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158. On the mechanism of myocardial edema contrast in T2-STIR images
X. Zhou, V. Rundell, Y. Liu, R. Tang, R. Klein, S. Giri, S. Shah, S.A. Tsaftaris, S. Zuehlsdorff, O. Simonetti, D. Li, R. Dharmakumar
SCMR 2010
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159. Artifacts-reduced 2D cine SSFP with flow compensation for myocardial BOLD imaging
X. Zhou, S.A. Tsaftaris, Y. Liu, R. Tang, R. Klein, S. Zuehlsdorff, D. Li, R. Dharmakumar
SCMR 2010
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160. Automated detection and quantification of microcirculatory oxygenation changes in the heart
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
SCMR 2010
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2008
161. A Dynamic Programming Solution to Tracking and Elastically Matching Left Ventricular Walls in Cardiac CINE MRI
S.A. Tsaftaris, V. Andermatt, A. Schlegel, A. K. Katsaggelos, D. Li, R. Dharmakumar
ICIP 2008
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162. Local Feature Extraction for Video Copy Detection in a Database
E. Maani, S.A. Tsaftaris, A.K. Katsaggelos
ICIP 2008
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163. Automated Line Flattening of Atomic Force Microscopy Images
S.A. Tsaftaris, J. Zujovic, A.K. Katsaggelos
ICIP 2008
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164. Restoration of the Cantilever Bowing Distortion in Atomic Force Microscopy
S.A. Tsaftaris, J. Zujovic, A.K. Katsaggelos
EUSIPCO 2008
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165. Automated Tracking of a Passive Endomyocardial Stiletto Catheter with Dephased FLAPS MRI: A Feasibility Study
I. Koktzoglou, S.A. Tsaftaris, S. Zuehlsdorff, D. Li, A.K. Katsaggelos, R. Dharmakumar
ISMRM 2008
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166. The Not So Digital Future of Digital Signal Processing
S.A. Tsaftaris, A.K. Katsaggelos
Proceedings of the IEEE, vol. 96, no. 3, pp. 375-377, 2008
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167. Automated Tracking of a Passive Intramyocardial Needle with Off-Resonance MRI: A Feasibility Study
I. Koktzoglou, S.A. Tsaftaris, D. Li, A.K. Katsaggelos, R. Dharmakumar
SCMR 2008
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2007
168. DNA Microarray Image Intensity Extraction Using Eigen-spots
S.A. Tsaftaris, R. Ahuja, D. Shiell, A.K. Katsaggelos
ICIP 2007
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169. Retrieval Accuracy of Very Large DNA-Based Databases of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos
ESPC 2007
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2006
170. Joint source-channel coding for wireless object-based video communications utilizing data hiding
H. Wang, S.A. Tsaftaris, A.K. Katsaggelos
IEEE Transactions Image Processing, vol. 15, no. 8, pp. 2158-69, 2006
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171. DNA as a medium for storing digital signals
S.A. Tsaftaris, V. Hatzimanikatis, A.K. Katsaggelos
ALIFE 2006
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172. DNA Hybridization as a Similarity Criterion for Querying Digital Signals Stored in DNA Databases
S.A. Tsaftaris, V. Hatzimanikatis, A.K. Katsaggelos
ICASSP 2006
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173. DNA sequencing
S.A. Tsaftaris, A.K. Katsaggelos
Wiley Encyclopedia of Medical Devices and Instrumentation (Second Edition), J.G. Webster, John Wiley and Sons, 2006-04-07
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2005
174. In silico estimation of annealing specificity of query searches in DNA databases
S.A. Tsaftaris, V. Hatzimanikatis, A.K. Katsaggelos
Journal of Japan Society of Simulation Technology, vol. 24, no. 4, pp. 268-276, 2005
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175. On Designing DNA Databases for the Storage and Retrieval of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos
ICNC 2005
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2004
176. How can DNA-Computing be applied to Digital Signal Processing?
S.A. Tsaftaris, T.N. Pappas, E.T. Papoutsakis, A.K. Katsaggelos
IEEE Signal Processing Magazine, vol. 21, no. 6, pp. 57-61, 2004
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177. DNA computing from a signal processing viewpoint
S.A. Tsaftaris, T.N. Pappas, E.T. Papoutsakis, A.K. Katsaggelos
IEEE Signal Processing Magazine, vol. 21, no. 5, pp. 100-106, 2004
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178. Fast watermarking of MPEG-1/2 streams using compressed-domain perceptual embedding and a generalized correlator detector
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, A. Briassouli, M.G. Strintzis
EURASIP Journal on Applied Signal Processing, vol. 8, pp. 1088-1106, 2004
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179. DNA Based Matching of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos, T.N. Pappa, E.T. Papoutsakis
ICASSP 2004
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2003
180. Digital Watermarking for the Copyright Protection of Compressed Video
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, G.A. Triantafyllidis, M.G. Strintzis
Intelligent Integrated Media Communication Techniques, J. Tasic, M. Ansorge, M. Najim, Springer US, 2003-11-30
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2002
181. Fast MPEG Watermarking for Copyright Protection
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouri, M.G. Strintzis
ICECS 2002
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182. Compressed-domain Video Watermarking of MPEG Streams
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, M.G. Strintzis
ICME 2002
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2001
183. Fast compressed domain watermarking of MPEG multiplexed streams
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, M.G. Strintzis
COST 2001, Information and Knowledge Management for Integrated Media Communication Workshop
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184. Digital watermarking of MPEG-1 & MPEG-2 multiplexed streams for copyright protection
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, M.G. Strintzis
DCV 2001, Workshop on Digital & Computational Video
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