Publications

2025

1. CRCE: Coreference-Retention Concept Erasure in Text-to-Image Diffusion Models
Yuyang Xue, Edward Moroshko, Feng Chen, Steven McDonagh, Sotirios A Tsaftaris
BMVC 2025
Preprint Code Website

3. SWiFT: Soft-Mask Weight Fine-tuning for Bias Mitigation
Junyu Yan, Feng Chen, Yuyang Xue, Yuning Du, Konstantinos Vilouras, Sotirios A Tsaftaris, Steven McDonagh
Machine Learning for Biomedical Imaging, 3
Code Website

4. MemControl: Mitigating Memorization in Diffusion Models via Automated Parameter Selection
Raman Dutt, Ondrej Bohdal, Pedro Sanchez, Sotirios A Tsaftaris, Timothy Hospedales
WACV 2025
Website

5. GMT: Guided Mask Transformer for Leaf Instance Segmentation
Feng Chen, Sotirios A Tsaftaris, Mario Valerio Giuffrida
WACV 2025
Code Website

6. MemControl: Mitigating Memorization in Diffusion Models via Automated Parameter Selection
Raman Dutt, Ondrej Bohdal, Pedro Sanchez, Sotirios A. Tsaftaris, Timothy Hospedales
WACV 2025
Preprint Website

7. A virtual power plant for coordinating batteries and EVs of distributed zero-energy houses considering the distribution system constraints
Mohammed Qais, Desen Kirli, Edward Moroshko, Aristides Kiprakis, Sotirios Tsaftaris
Journal of Energy Storage, 106
Website

8. Multimodal machine learning to predict surgical site infection with healthcare workload impact assessment
Kenneth A McLean, Alessandro Sgrò, Leo R Brown, Louis F Buijs, Katie E Mountain, Catherine A Shaw, Thomas M Drake, Riinu Pius, Stephen R Knight, Cameron J Fairfield, Richard JE Skipworth, Sotirios A Tsaftaris, Stephen J Wigmore, Mark A Potter, Matt-Mouley Bouamrane, Ewen M Harrison
npj Digital Medicine, 106
Website

9. Digital twin assisted surgery, concept, opportunities, and challenges
Lisa Asciak, Justicia Kyeremeh, Xichun Luo, Asimina Kazakidi, Patricia Connolly, Frederic Picard, Kevin O’Neill, Sotirios A Tsaftaris, Grant D Stewart, Wenmiao Shu
npj Digital Medicine, 8
Website

10. CROCODILE: Causality Aids Robustness via Contrastive Disentangled
Gianluca Carloni, Sotirios A Tsaftaris, Sara Colantonio
MICCAI 2024
Website

2024

11. There are no shortcuts to anywhere worth going: identifying shortcuts in deep learning models for medical image analysis
Christopher Boland, Keith A Goatman, Sotirios A Tsaftaris, Sonia Dahdouh
MIDL 2025
Website

12. Benchmarking counterfactual image generation
Thomas Melistas, Nikos Spyrou, Nefeli Gkouti, Pedro Sanchez, Athanasios Vlontzos, Yannis Panagakis, Giorgos Papanastasiou, Sotirios A Tsaftaris
NeurIPS 2025
Code Website

13. Unlocking the Potential of Weakly Labeled Data: A Co-Evolutionary Learning Framework for Abnormality Detection and Report Generation
Jinghan Sun, Dong Wei, Zhe Xu, Donghuan Lu, Hong Liu, Hong Wang, Sotirios A Tsaftaris, Steven McDonagh, Yefeng Zheng, Liansheng Wang
IEEE Transactions on Medical Imaging, 1--13
Code Website

14. Zero-shot medical phrase grounding with off-the-shelf diffusion models
Konstantinos Vilouras, Pedro Sanchez, Alison Q O'neil, Sotirios A Tsaftaris
IEEE Journal of Biomedical and Health Informatics, 1--13
Code Website

15. All You Need Is a Guiding Hand: Mitigating Shortcut Bias in Deep Learning Models for Medical Imaging
C Boland, O Anderson, KA Goatman, J Hipwell, SA Tsaftaris, S Dahdouh
MICCAI 2024, Workshop on Fairness of AI in Medical Imaging
Website

16. BMFT: Achieving Fairness via Bias-based Weight Masking Fine-tuning
Y Xue, J Yan, R Dutt, F Haider, J Liu, S McDonagh, SA Tsaftaris
MICCAI 2024, Workshop on Fairness of AI in Medical Imaging
Code Website

17. The MRI Scanner as a Diagnostic: Image-less Active Sampling
Y Du, R Dharmakumar, SA Tsaftaris
MICCAI 2024
Preprint

18. Erase to Enhance: Data-Efficient Machine Unlearning in MRI Reconstruction
Y Xue, J Liu, S McDonagh, SA Tsaftaris
MIDL 2024
Code Website

19. Long-short diffeomorphism memory network for weakly-supervised ultrasound landmark tracking
Z Liu, B Yang, Y Shen, X Ni, SA Tsaftaris, H Zhou
Medical Image Analysis, 1--13
Preprint Website

20. Inference Stage Denoising for Undersampled MRI Reconstruction
Y Xue, C Qin, SA Tsaftaris
ISBI 2024
Preprint Code Website

21. Metrics reloaded: recommendations for image analysis validation
Maier-Hein, Lena and Reinke, Annika and Godau, Patrick and others
Nature Methods, 1--18
Full Text Preprint

22. Understanding metric-related pitfalls in image analysis validation
Reinke, Annika and Tizabi, Minu D and Baumgartner and others
Nature Methods, 1--13
Preprint Website

23. Compositionally Equivariant Representation Learning
Liu, Xiao and Sanchez, Pedro and Thermos, Spyridon and O’Neil, Alison Q and Tsaftaris, Sotirios A
IEEE Transactions on Medical Imaging, 1-1
Full Text Preprint

2023

24. Neural Networks Memorise Personal Information from One Sample
J. Hartley, P.P. Sanchez, F. Haider, S.A. Tsaftaris
Scientific Reports, vol. 13, no. 1, pp. 21366, 2023
Full Text Preprint

25. Unveiling Fairness Biases in Deep Learning-Based Brain MRI Reconstruction
Y. Du, Y. Xue, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2023, Workshop on Clinical Image-Based Procedures
Preprint Code Website

26. Group Distributionally Robust Knowledge Distillation
K. Vilouras, X. Liu, P. Sanchez, A.Q. O'Neil, S.A. Tsaftaris
MICCAI 2023, International Workshop on Machine Learning in Medical Imaging
Preprint Website

27. Compositional Representation Learning for Brain Tumour Segmentation
X. Liu, A. Kascenas, H. Watson, S.A. Tsaftaris, A.Q. O'Neil
MICCAI 2023, Workshop on Domain Adaptation and Representation Transfer
Preprint Website

28. Debiasing Counterfactuals in the Presence of Spurious Correlations
A. Kumar, N. Fathi, R. Mehta, B. Nichyporuk, J.-P. R. Falet, S. Tsaftaris, T. Arbel
MICCAI 2023, Workshop on Clinical Image-Based Procedures
Preprint Website

29. Adapting Vision Foundation Models for Plant Phenotyping
F. Chen, M.V. Giuffrida, S.A. Tsaftaris
IEEE/CVF International Conference on Computer Vision 2023
Website

30. The role of noise in denoising models for anomaly detection in medical images
A. Kascenas, P. Sanchez, P. Schrempf, C. Wang, W. Clackett, S.S. Mikhael, J.P. Voisey, K. Goatman, A. Weir, N. Pugeault, S.A. Tsaftaris, A.Q. O'Neil
Medical Image Analysis, Volume 90, December 2023
Preprint Website

31. SLX: Similarity Learning for X-Ray Screening and Robust Automated Disassembled Object Detection
N. Dionelis, R. Jackson, S.A. Tsaftaris, M. Yaghoobi
IJCNN 2023
Website

32. GaNDLF: The Generally Nuanced Deep Learning Framework for Scalable End-to-End Clinical Workflows
S. Pati, S.P. Thakur, İ. E. Hamamcı, U. Baid, B. Baheti, M. Bhalerao, O. Güley, S. Mouchtaris, D. Lang, S.A. Tsaftaris, et al.
Communications Engineering, vol. 2, no. 1, pp. 23, 2023
Preprint Code Website

33. MyoPS: A Benchmark of Myocardial Pathology Segmentation Combining Three-Sequence Cardiac Magnetic Resonance Images
L. Li, F. Wu, S.A. Tsaftaris, et al.
Medical Image Analysis, vol. 87, pp. 102808, 2023
Preprint Website

34. Diffusion Models for Causal Discovery via Topological Ordering
P. Sanchez, X. Liu, A.Q. O'Neil, S.A. Tsaftaris
ICLR 2023
Preprint Code

2022

35. Clinically Plausible Pathology-Anatomy Disentanglement in Patient Brain MRI with Structured Variational Priors
A. Hu, J. R. Falet, B. S. Nichyporuk, C. Shui, D. L. Arnold, S. A. Tsaftaris, T. Arbel
preprint 2022
Preprint

36. Adversarial counterfactual augmentation: application in Alzheimer’s disease classification
T. Xia, P. Sanchez, C. Qin, S.A. Tsaftaris
Frontiers in Radiology, 2022
Code Website

37. Rethinking Generalization: The Impact of Annotation Style on Medical Image Segmentation
B. Nichyporuk, J. Cardinell, J. Szeto, R. Mehta, J. R. Falet, D. L. Arnold, S.A. Tsaftaris, T. Arbel
preprint 2022
Preprint

38. Why Patient Data Cannot Be Easily Forgotten?
R. Su, X. Liu ,S.A. Tsaftaris
MICCAI 2022
Full Text Preprint

39. vMFNet: Compositionality Meets Domain-generalised Segmentation
X. Liu, S. Thermos, P. Sanchez, A.Q. O'Neil, S.A. Tsaftaris
MICCAI 2022
Full Text Preprint Code

40. Cardiac aging synthesis from cross-sectional data with conditional generative adversarial networks
V. Campello, T. Xia, X. Liu, P. Sanchez, C. Martín-Isla, S.E. Petersen, S. Segui, S.A. Tsaftaris, K. Lekadir
Frontiers in Cardiovascular Medicine, 2022
Code Website

41. Counterfactual Image Synthesis for Discovery of Personalized Predictive Image Markers
A. Kumar, A. Hu, B. Nichyporuk, J. R. Falet, D.L. Arnold, S.A. Tsaftaris, T. Arbel
MICCAI workshop 2022, Medical Image Assisted BIomarkers’ Discovery
Preprint

42. What is Healthy? Generative Counterfactual Diffusion for Lesion Localization
P. Sanchez, A. Kascenas, X. Liu, A.Q. O'Neil, S.A. Tsaftaris
MICCAI Workshop 2022, Deep Generative Models
Full Text Preprint Code

43. HSIC-InfoGAN: Learning Unsupervised Disentangled Representations by Maximising Approximated Mutual Information
X. Liu, S. Thermos, P. Sanchez, A.Q. O'Neil, S.A. Tsaftaris
MICCAI Workshop 2022, Medical Applications with Disentanglements (MAD)
Preprint

44. Causal machine learning for healthcare and precision medicine
P. Sanchez, J.P. Voisey, T. Xia, H.I. Watson, A.Q. O’Neil and S.A. Tsaftaris
Royal Society Open Science, 2022
Website

45. Survey: Leakage and Privacy at Inference Time
M. Jegorova, C. Kaul, C. Mayor, A.Q. O'Neil, A. Weir, R. Murray-Smith, S.A. Tsaftaris
IEEE Transactions on Pattern Analysis & Machine Intelligence, no. 01, pp. 1-20, 5555
Full Text Preprint

46. CTR: Contrastive Training Recognition Classifier for Few-Shot Open-World Recognition
N. Dionelis, S. A. Tsaftaris, M. Y. Vaighan
ICPR 2022

47. Indication as Prior Knowledge for Multimodal Disease Classification in Chest Radiographs with Transformers
G. Jacenków; A.Q. O’Neil, S.A. Tsaftaris
ISBI 2022
Full Text Preprint Code

48. Learning Disentangled Representations in the Imaging Domain
X. Liu, P. Sanchez, S. Thermos, A.Q. O'Neil, S.A. Tsaftaris
Medical Image Analysis, Volume 80, 2022
Full Text Preprint Website

49. Re-using Adversarial Mask Discriminators for Test-time Training under Distribution Shifts
G. Valvano, A. Leo, S.A. Tsaftaris
Machine Learning for Biomedical Imaging, MICCAI Special Issue, 2022
Full Text Preprint

50. Why patient data cannot be easily forgotten?
R. Su, X. Liu, S.A. Tsaftaris
MICCAI 2022
Full Text Preprint

51. Diffusion Causal Models for Counterfactual Estimation
P. Sanchez, S.A. Tsaftaris
CLeaR 2022
Preprint Code

52. Measuring Unintended Memorisation of Unique Private Features in Neural Networks.
J. Hartley, S.A. Tsaftaris
2022
Preprint Code

2021

53. OMASGAN: Out-of-distribution Minimum Anomaly Score GAN for Anomaly Detection
N. Dionelis, S. A. Tsaftaris, M. Y. Vaighan
SSPD 2021
Preprint

54. Controllable cardiac synthesis via disentangled anatomy arithmetic
S. Thermos, X. Liu, A. O'Neil, S.A. Tsaftaris
MICCAI 2021
Preprint Code

55. Semi-supervised Meta-learning with Disentanglement for Domain-generalised Medical Image Segmentation
X. Liu, S. Thermos, A. O'Neil, S.A. Tsaftaris
MICCAI 2021
Preprint Code

56. Self-supervised Multi-scale Consistency for Weakly Supervised Segmentation Learning
G. Valvano, A. Leo, S.A. Tsaftaris
MICCAI workshop, 2021, DART
Preprint Code

57. Stop Throwing Away Discriminators! Re-using Adversaries for Test-Time Training
G. Valvano, A. Leo, S.A. Tsaftaris
MICCAI workshop, 2021, DART
Preprint Code

58. Cohort Bias Adaptation in Aggregated Datasets for Lesion Segmentation
B. Nichyporuk, J. Cardinell, J. Szeto, R. Mehta, S.A. Tsaftaris, D.L. Arnold, T. Arbel
MICCAI workshop, 2021, DART
Preprint

59. Data-driven feature learning for myocardial registration and segmentation
I. Oksuz, A. Mukhopadhyay, R. Dharmakumar, and S. A. Tsaftaris
Elsevier, Lecture Notes in Computer Science, Diabetes and Cardiovascular Disease, pp. 185–225.
Full Text

60. Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge
V. M. Campello et al.
IEEE Transactions on Medical Imaging, 2021
Full Text

61. Complementary Time-Frequency Domain Networks for Dynamic Parallel MR Image Reconstruction
C. Qin, J. Duan, K. Hammernik, J. Schlemper, T. Küstner, R. Botnar, C. Prieto, A. N. Price, J. V. Hajnal, and D. Rueckert
Magnetic Resonance in Medicine, 2021
Code Website

62. Learning to Segment from Scribbles using Multi-scale Adversarial Attention Gates
G. Valvano, A. Leo, S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 40, no. 8, pp. 1990-2001, Aug. 2021
Preprint Code Website

2020

63. DiCyc: GAN-based deformation invariant cross-domain information fusion for medical image synthesis
C. Wang, G. Yang, G. Papanastasiou, S. A. Tsaftaris, D. E. Newby, C. Gray, G. Macnaught, T. J. MacGillivray
Information Fusion, vol 67, 2021, pp. 147-160,
Full Text Preprint Website

64. Biomechanics-Informed Neural Networks for Myocardial Motion Tracking in MRI
C. Qin, S. Wang, C. Chen, H. Qiu, W. Bai, and D. Rueckert.
MICCAI 2020
Preprint Code Website

65. Disentangle, align and fuse for multimodal and zero-shot image segmentation
A. Chartsias, G. Papanastasiou, C. Wang, S. Semple, D. Newby, R. Dharmakumar, S.A. Tsaftaris
IEEE Transactions on Medical Imaging, Volume: 40, Issue: 3, March 2021
Full Text Preprint Code

66. Semi-supervised Pathology Segmentation with Disentangled Representations
H. Jiang, A. Chartsias, X. Zhang, G. Panastasiou, S. Semple, M. Dweck, D. Semple, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2020, DART: Domain Adaptation and Representation Transfer
Preprint Code

67. Max-Fusion U-Net for Multi-Modal Pathology Segmentation with Attention and Dynamic Resampling
H. Jiang, C. Wang, A. Chartsias, S.A. Tsaftaris
MICCAI 2020, MyoPS: Multi-sequence CMR based Mycardial Pathology Segmentation Challenge
Preprint Code

68. Measuring the Biases and Effectiveness of Content-Style Disentanglement
X. Liu, S. Thermos, G. Valvano, A. Chartsias, A.Q. O'Neil, S.A. Tsaftaris
BMVC, 2021
Preprint Code

69. Disentangled Representations for Domain-generalized Cardiac Segmentation
X. Liu, S. Thermos, A. Chartsias, A.Q. O'Neil, S.A. Tsaftaris
MICCAI 2020, STACOM: Statistical Atlases and Computational Modelling of the Heart
Preprint Code

70. INSIDE: Steering Spatial Attention with Non-Imaging Information in CNNs
G. Jacenków, A.Q. O'Neil, B. Mohr, S.A. Tsaftaris
MICCAI 2020
Full Text Preprint Code

71. Have you forgotten? A method to assess if machine learning models have forgotten data
X. Liu, S.A. Tsaftaris
MICCAI 2020
Preprint

72. AI in Medical Imaging Informatics: Current Challenges and Future Directions
A. S. Panayides, A. Amini, N. D. Filipovic, A. Sharma, S.A. Tsaftaris, A. Young, D. Foran, N. Do, S. Golemati, T. Kurc, K. Huang, K. S. Nikita, B.P. Veasey, M. Zervakis, J. H. Saltz, C. S. Pattichis
IEEE Journal of Biomedical and Health Informatics, vol. 24, no. 7, 1837-1857, 2020
Full Text Website

73. Pseudo-healthy synthesis with pathology disentanglement and adversarial learning
T. Xia, A. Chartsias, S.A. Tsaftaris
Medical Image Analysis, vol. 64, 2020
Full Text Preprint Code

74. Teacher-Student chain for efficient semi-supervised histology image classification
S. Shaw, M. Pajak, A. Lisowska, S.A. Tsaftaris, A.Q. O'Neil
ICLR 2020, AI for Affordable Healthcare (AI4AH)
Preprint

75. Deep Learning for Cardiac Image Segmentation: A Review
C. Chen, C. Qin, H. Qiu, G. Tarroni, J. Duan, W. Bai, D. Rueckert
Frontiers in Cardiovascular Medicine, vol. 7, 2020
Website

76. Doing More with Less: A Multitask Deep Learning Approach in Plant Phenotyping
A. Dobrescu, M.V. Giuffrida, S.A. Tsaftaris
Frontiers in Plant Science, 11:141
Full Text Code

77. Tail of Distribution GAN: GAN-Based Boundary of Distribution Formation
N. Dionelis, M. Yaghoobi, S.A. Tsaftaris
SSPD 2020

78. Boundary of Distribution Support Generator (BDSG): Sample Generation on the Boundary
N. Dionelis, M. Yaghoobi, S.A. Tsaftaris
IEEE ICIP 2020

2019

79. Blind Inpainting of Large-scale Masks of Thin Structures with Adversarial and Reinforcement Learning
H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
TBA, submitted
Preprint Code

80. Learning to synthesise the ageing brain without longitudinal data
T. Xia, A. Chartsias, C. Wang, S.A. Tsaftaris
Medical Image Analysis, vol. 73, 102169, October 2021
Preprint Code

81. Ontological attention ensembles for capturing semantic concepts in ICD code prediction from clinical text
M. Falis, M. Pajak, A. Lisowska, P. Schrempf, L. Deckers, S. Mikhael, S.A. Tsaftaris, A.Q. O'Neil
EMNLP-IJCNLP 2019, Tenth International Workshop on Health Text Mining and Information Analysis
Full Text

82. Unsupervised Rotation Factorization in Restricted Boltzmann Machines
V. Giuffrida, S.A. Tsaftaris
IEEE Transactions on Image Processing, vol. 29, no. 1, pp. 2166-2175, 2020
Full Text PDF Code

83. Temporal Consistency Objectives Regularize the Learning of Disentangled Representations
G. Valvano, A. Chartsias, A. Leo, S.A. Tsaftaris
MICCAI 2019, DART: Domain Adaptation and Representation Transfer
Preprint Code

84. TPSDicyc: Improved Deformation Invariant Cross-domain Medical Image Synthesis
C. Wang, G. Papanastasiou, S.A. Tsaftaris, G. Yang, C. Gray, D. Newby, G. Macnaught, T. MacGillivray
MICCAI 2019, MLMIR: Machine Learning for Medical Image Reconstruction
Full Text PDF

85. Multimodal cardiac segmentation using disentangled representations
A. Chartsias, G. Papanastasiou, C. Wang, C. Stirrat, S. Semple, D. Newby, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2019, STACOM: Statistical Atlases and Computational Models of the Heart
PDF Code

86. Consistent Brain Ageing Synthesis
T. Xia, A. Chartsias, S.A. Tsaftaris
MICCAI 2019
PDF Code

87. Cardiovascular Magnetic Resonance Assessment of Myocardial Oxygenation
R. Dharmakumar, S.A. Tsaftaris, H.-J. Yang, D. Li
Elsevier, Lecture Notes in Computer Science, Cardiovascular Magnetic Resonance (Third Edition), pp. Pages 84-96.e3
Full Text

88. Disentangled Representation Learning in Cardiac Image Analysis
A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris
Medical Image Analysis, vol. 58, 2019
Full Text Preprint Code

89. Conditioning Convolutional Segmentation Architectures with Non-Imaging Data
G. Jacenków, A. Chartsias, B. Mohr, S.A. Tsaftaris
MIDL 2019
Full Text

90. Adversarial Pseudo Healthy Synthesis Needs Pathology Factorization
T. Xia, A. Chartsias, S.A. Tsaftaris
MIDL 2019
Full Text Code

91. Adversarial Large-Scale Root Gap Inpainting
H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
CVPR 2019, CVPPP: Computer Vision Problems in Plant Phenotyping
Full Text

92. Leaf Counting Without Annotations Using Adversarial Unsupervised Domain Adaptation
M.V. Giuffrida, A. Dobrescu, P. Doerner, S.A. Tsaftaris
CVPR 2019, CVPPP: Computer Vision Problems in Plant Phenotyping
Full Text

93. Accurate needle-free assessment of myocardial oxygenation for ischemic heart disease in canines using magnetic resonance imaging
H.J. Yang, I. Oksuz, D. Dey, J. Sykes, M. Klein, J. Butler, M. S. Kovacs, O. Sobczyk, I. Cokic, P. J. Slomka, X. Bi, D. Li, M. Tighiouart, S.A. Tsaftaris, F.S. Prato, J. A. Fisher and R. Dharmakumar
Science Translational Medicine, vol. 11, Issue 494, eaat4407, 2019
Full Text

94. Affordable and robust phenotyping framework to analyse root system architecture of soil-grown plants
T. Bontpart, C. Concha, M.V. Giuffrida, I. Robertson, K. Admkie, T. Degefu, N. Girma, K. Tesfaye, T. Haileselassie, A. Fikre, M. Fetene, S.A. Tsaftaris, P. Doerner
The Plant Journal, vol. 103, no. 6, Sept. 2020
Preprint

95. The Generalized Complex Kernel Least-Mean-Square Algorithm
R. Boloix-Tortosa, J.J. Murillo-Fuentes, S.A. Tsaftaris
IEEE Transactions on Signal Processing, vol. 67, no. 20, pp. 5213 - 5222, 2019
Full Text Preprint PDF

96. Doing more with less: semi-supervised cardiac segmentation with a fraction of labeled images
A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris
SCMR 2019

97. Sharing the Right Data Right: A Symbiosis with Machine Learning
S.A Tsaftaris, H. Scharr
Trends in Plant Science, vol. 24, no. 2, pp. 99-102, 2019
Full Text Website

2018

98. Joint learning of motion estimation and segmentation for cardiac MR image sequences.
C. Qin, W. Bai, J. Schlemper, S. E. Petersen, S. K. Piechnik, S. Neubauer, and D. Rueckert
MICCAI 2018
Preprint Code Website

99. Factorised spatial representation learning: application in semi-supervised myocardial segmentation
A. Chartsias, T. Joyce, G. Papanastasiou, S. Semple, M. Williams, D. Newby, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2018
Preprint Code

100. Cardiovascular Magnetic Resonance Assessment of Myocardial Oxygenation
R. Dharmakumar, S.A. Tsaftaris, H.-J. Yang, D. Li
Cardiovascular Magnetic Resonance (Third Edition), W. Manning, D. Manning, Elsevier, 2018-09-10
Full Text

101. Brain lesion segmentation through image synthesis and outlier detection
C. Bowles, C. Qin, R. Guerrero, R. Gunn, A. Hammers, D.A. Dickie, M. Valdés Hernández, J. Wardlaw, D. Rueckert
NeuroImage: Clinical, vol. 16, 2017
Full Text

102. Root Gap Correction with a Deep Inpainting Model
H. Chen, M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
BMVC 2018, CVPPP: Computer Vision Problems in Plant Phenotyping
Full Text

103. Pheno-Deep Counter: a unified and versatile deep learning architecture for leaf counting
M.V. Giuffrida, P. Doerner, S.A. Tsaftaris
The Plant Journal, In Press. 2018
Full Text PDF

104. Deep Multi-Class Segmentation Without Ground-Truth Labels
T. Joyce, A. Chartsias, S.A. Tsaftaris
MIDL 2018
Full Text

105. Editorial for Special Issue on Reproducible Research
Ö.N. Gerek, B. Boashash, M. Leszczuk, S.A. Tsaftaris, W. Armour, D. Wallom
Digital Signal Processing, vol. 77, pp. 1-4, 2018
Full Text

106. Editorial for Simulation and Synthesis in Medical Imaging
A. Frangi, S.A. Tsaftaris, J. Prince
IEEE Transactions on Medical Imaging, vol. 37, no. 3, pp. 673-679, 2018
Full Text

107. Citizen crowds and experts: observer variability in image-based plant phenotyping
V. Giuffrida, F. Chen, H. Scharr, S.A. Tsaftaris
Plant Methods, vol. 14, no. 12, 2018
Full Text Website

2017

108. White matter hyperintensity and stroke lesion segmentation and differentiation using convolutional neural networks
R. Guerrero, C. Qin, O. Oktay, C. Bowles, L. Chen, R. Joules, R. Wolz, M.C. Valdés-Hernández, D.A. Dickie, J. Wardlaw, D. Rueckert
NeuroImage: Clinical, vol. 17, 2018
Full Text

109. A large margin algorithm for automated segmentation of white matter hyperintensity
C. Qin, R. Guerrero, C. Bowles, L. Chen, D.A. Dickie, M. del C. Valdes-Hernandez, J. Wardlaw, D. Rueckert
Pattern Recognition, vol. 77, 2018
Website

110. A 'Do-It-Yourself' phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants
A. Dobrescu, L.C.T. Scorza, S.A. Tsaftaris, and A. McCormick
Plant Methods, 13:95, 2017
Full Text PDF

111. ARIGAN: Synthetic Arabidopsis Plants using Generative Adversarial Network
M.V. Giuffrida, H. Scharr, S.A. Tsaftaris
ICCV 2017, CVPPP: Computer Vision Problems in Plant Phenotyping
PDF

112. Leveraging multiple datasets for deep leaf counting
A. Dobrescu, M.V. Giuffrida, S.A. Tsaftaris
ICCV 2017, CVPPP: Computer Vision Problems in Plant Phenotyping
PDF Code

113. Multimodal MR Synthesis via Modality-Invariant Latent Representation
A. Chartsias, T. Joyce, V. Giuffrida, and S. A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 37, no. 3, pp. 803-814, 2018
Full Text PDF Code

114. Computer Vision Problems in Plant Phenotyping, CVPPP 2017
H. Scharr, T. Pridmore, S.A. Tsaftaris
The IEEE International Conference on Computer Vision (ICCV), Introduction to the CVPPP 2017 Workshop Papers, pp. 2020-2021
Full Text

115. Simulation and Synthesis in Medical Imaging: Second International Workshop, SASHIMI 2017
S.A. Tsaftaris, A. Gooya, A Frangi, J. Prince
SASHIMI 2017, Held in Conjunction with MICCAI 2017, Quebec City, Lecture Notes in Computer Science, vol. 10557
Full Text Website

116. Joint Myocardial Registration and Segmentation of Cardiac BOLD MRI
I. Oksuz, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2017, STACOM: Statistical Atlases and Computational Models of the Heart
PDF

117. Adversarial Image Synthesis for Unpaired Multi-Modal Cardiac Data
A. Chartsias, T. Joyce, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2017, SASHIMI: Simulation and Synthesis in Medical Imaging
PDF

118. Robust Multi-Modal MR Image Synthesis
T. Joyce, A. Chartsias, S.A. Tsaftaris
MICCAI 2017
PDF Code

119. Unsupervised Myocardial Segmentation for Cardiac BOLD
I. Oksuz, A. Mukhopadhyay, R. Dharmakumar and S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 36, no. 11, pp. 2228-2238, 2017
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120. Arterial CO2 Can Potentiate Myocardial Blood Flow to the Same Extent as Adenosine
H.J. Yang, D. Dey, J. Sykes, M. Klein, J. Butler, M. Kovacs, O. Sobczyk, B. Sharif, X. Bi, A. Kali, I. Cokic, R. Tang, R. Yumul, A. Conte, S.A. Tsaftaris, M. Tighiouart, D. Li, P.J. Slomka, D. Berman, F. Prato, J. Fisher, R. Dharmakumar
Journal of Nuclear Medicine, vol. 58. no. 6, pp. 953-960, 2017
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121. Convolutional Recurrent Neural Networks for Dynamic MR Image Reconstruction
C. Qin, J. Schlemper, J. Caballero, A.N. Price, J.V. Hajnal, and D. Rueckert
IEEE Transactions on Medical Imaging, vol. 38, 2019
Preprint Code Website

122. Statistical shape modeling of the left ventricle: myocardial infarct classification challenge
A. Suinesiaputra, P. Ablin, X. Alba, M. Alessandrini, J. Allen, W. Bai, S. Cimen, P. Claes, B. Cowan, J. D''hooge, N. Duchateau, J. Ehrhardt, A. Frangi, A. Gooya, V. Grau, K. Lekadir, A. Lu, A. Mukhopadhyay, I. Oksuz, N. Parajuli, X. Pennec, M. Pereanez, C. Pinto, P. Piras, M.M. Rohe, D. Rueckert, D. Saring, M. Sermesant, K. Siddiqi, M. Tabassian, L. Teresi, S.A. Tsaftaris, M. Wilms, A. Young, X. Zhang, P. Medrano-Gracia
IEEE Journal of Biomedical and Health Informatics, vol. 22, no. 2, pp. 503-515, 2018
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123. Phenotiki: An open software and hardware platform for affordable and easy image-based phenotyping of rosette-shaped plants
M. Minervini, V. Giuffrida, P. Perata, S.A. Tsaftaris
The Plant Journal, vol. 90, no. 1, pp. 204-216, 2017
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2016

124. Machine Learning for Plant Phenotyping Needs Image Processing
S.A. Tsaftaris, M. Minervini, H. Scharr
Trends in Plant Science, vol. 21, no. 12, pp. 989-991, 2016
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125. Whole Image Synthesis using a Deep Encoder-Decoder Network
V. Sevetlidis, M.V. Giuffrida, S.A. Tsaftaris
MICCAI 2016, SASHIMI: Simulation and Synthesis in Medical Imaging
PDF

126. A Semi-supervised Large Margin Algorithm for White Matter Hyperintensity Segmentation
C. Qin, R. Moreno, C. Bowles, C. Ledig, P. Scheltens, F. Barkhof, H. Rhodius-Meester, B. Tijms, A.W. Lemstra, W.M. van der Flier, B. Glocker, D. Rueckert
MICCAI 2016, MLMI: Machine Learning in Medical Imaging
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127. Pseudo-healthy Image Synthesis for White Matter Lesion Segmentation
C. Bowles, C. Qin, C. Ledig, R. Guerrero, R. Gunn, A. Hammers, E. Sakka, D.A. Dickie, M. Valdés Hernández, N. Royle, J. Wardlaw, H. Rhodius-Meester, B. Tijms, A.W. Lemstra, W. van der Flier, F. Barkhof, P. Scheltens, D. Rueckert
MICCAI 2016, SASHIMI: Simulation and Synthesis in Medical Imaging
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128. Finely-grained annotated datasets for image-based plant phenotyping
M. Minervini, A. Fischbach, H. Scharr, S. A. Tsaftaris
Pattern Recognition Letters, vol. 81, no. 1, pp. 80-89, 2016
Full Text PDF Website

129. Simulation and Synthesis in Medical Imaging: First International Workshop, SASHIMI 2016
S.A. Tsaftaris, A. Gooya, A Frangi, J. Prince
SASHIMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, Lecture Notes in Computer Science, vol. 9968
Full Text Website

130. Rotation-Invariant Restricted Boltzmann Machine using Shared Gradient Filters
M.V. Giuffrida, S.A. Tsaftaris
ICANN 2016
Preprint

131. Semi-automated registration-based anatomical labelling, voxel based morphometry and cortical thickness mapping of the mouse brain
M. Pagani, M. Damiano, A. Galbusera, S.A. Tsaftaris, A. Gozzi
Journal of Neuroscience Methods, vol. 267, pp. 62-73, 2016
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132. Editorial for Special issue on computer vision and image analysis in plant phenotyping
H. Scharr, H. Dee, A.P. French, S.A. Tsaftaris
Machine Vision and Applications, vol. 27, pp. 607-609, 2016
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133. Theta-RBM: Unfactored Gated Restricted Boltzmann Machine for Rotation-Invariant Representations
M.V. Giuffrida, S.A. Tsaftaris

Preprint

134. Supporting Autonomic Management of Clouds: Service Clustering with Random Forest
R. B. Uriarte, S.A. Tsaftaris, F. Tiezzi
IEEE Transactions on Network and Service Management, vol. 13, no. 3, pp. 595-607, 2016
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2015

135. Classification-aware distortion metric for HEVC intra coding
M. Minervini, S. A. Tsaftaris
VCIP 2015
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136. Leaf segmentation in plant phenotyping: A collation study
H. Scharr, M. Minervini, A. P. French, C. Klukas, D. M. Kramer, X. Liu, I. Luengo Muntión, J.-M. Pape, G. Polder, D. Vukadinovic, X. Yin, S.A. Tsaftaris
Machine Vision and Applications, vol. 27, pp. 585-606, 2016
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137. Supervised Learning of Functional Maps for Infarct Classification
A. Mukhopadhyay, I. Oksuz, S.A. Tsaftaris
MICCAI 2015, STACOM: Statistical Atlases and Computational Models of the Heart
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138. Unsupervised myocardial segmentation for cardiac MRI
A. Mukhopadhyay, I. Oksuz, M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2015
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139. Dictionary Learning Based Image Descriptor for Myocardial Registration of CP BOLD MR
I. Oksuz, A. Mukhopadhyay, M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
MICCAI 2015
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140. An interactive tool for semi-automated leaf annotation
M. Minervini, M.V. Giuffrida, S.A. Tsaftaris
BMVC 2015, CVPPP: Computer Vision Problems in Plant Phenotyping
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141. Learning to Count Leaves in Rosette Plants
M.V. Giuffrida, M. Minervini, S.A. Tsaftaris
BMVC 2015, CVPPP: Computer Vision Problems in Plant Phenotyping
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142. The Significance of Image Compression in Plant Phenotyping Applications
M. Minervini, H. Scharr, S.A. Tsaftaris
Functional Plant Biology, vol. 42, no. 10, pp. 971-988, 2015
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143. Dictionary-driven Ischemia Detection from Cardiac Phase-Resolved Myocardial BOLD MRI at Rest
M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 35, no. 1, pp. 282-293, 2016
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144. Computationally efficient data and application driven color transforms for the compression and enhancement of images and video
M. Minervini, C. Rusu, S. A. Tsaftaris
Color Image and Video Enhancement, E. Celebi, M. Lecca, B. Smolka, Springer, 2015-08-14
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145. Data-Driven Feature Learning for Myocardial Segmentation of CP-BOLD MRI
A. Mukhopadhyay, I. Oksuz, M. Bevilacqua, R. Dharmakumar, S.A. Tsaftaris
FIMH 2015
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146. Image Analysis: the new bottleneck in plant phenotyping
M. Minervini, H. Scharr, S.A. Tsaftaris
IEEE Signal Processing Magazine, vol. 32, no. 4, pp. 126-131, 2015
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147. Dictionary-based Support Vector Machines for Unsupervised Ischemia Detection at Rest with CP-BOLD Cardiac MRI
M. Bevilacqua, A. Mukhopadhyay, I. Oksuz, C. Rusu, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2015

148. Data Driven Feature Learning For Representation of Myocardial BOLD MR Images
A. Mukhopadhyay, M. Bevilacqua, I. Oksuz, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2015

149. Effect of BOLD Contrast on Myocardial Registration
I. Oksuz, A. Mukhopadhyay, M. Bevilacqua, H.-J. Yang, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2015

150. Service Clustering for Autonomic Clouds Using Random Forest
R.B. Uriarte, S.A. Tsaftaris, F. Tiezzi
IEEE/ACM 2015
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2014

151. Unsupervised and Supervised Approaches to Color Space Transformation for Image Coding
M. Minervini, C. Rusu, S.A. Tsaftaris
ICIP 2014
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152. Structured Dictionaries for Ischemia Estimation in Cardiac BOLD MRI at Rest
C. Rusu, S.A. Tsaftaris
MICCAI 2014
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153. Image based plant phenotyping with incremental learning and active contours
M. Minervini, M.M. Abdelsamea, S.A. Tsaftaris
Ecological Informatics Journal, Special Issue on Multimedia in Ecology and Environment, vol. 23, pp. 35-48, 2014
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154. Electrical Characteristics of Chronic Iron-Laden Myocardial Infarcts: Initial Study in Canine Hearts
I. Cokic, A. Kali, X. Wang, H. Yang, R.L. Tang, A. Thajudeen, M. Shehata, A.M. Amorn, E. Liu, B. Stewart, N. Bennett, D. Harlev, S.A. Tsaftaris, W.M. Jackman, S.S. Chugh, R. Dharmakumar
ISMRM 2014

155. Probing Myocardial Blood Oxygenation Reserve of Canines with Controlled Hypercapnia using T2-prepared BOLD CMR
H. Yang, R. Yumul, R.L. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, B. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, J. Min, D.S. Berman, A.H. Conte, J. Fisher, R. Dharmakumar
ISMRM 2014
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156. Unsupervised Ischemia Detection at Rest with CP-BOLD Cardiac MRI: A Simulation Study Employing Independent Component Analysis
R. Morisi, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2014
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157. Temporal and Spatial Variation of Baseline Myocardial BOLD Signal Intensity in Cardiac Phase-Resolved BOLD MRI: A Potentially Revealing Insight into Dynamic Changes in Myocardial Oxygenation
D. Boschetto, C. Rusu, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2014

158. A Synthetic Generator of Myocardial Blood-Oxygen-Level-Dependent MRI Timeseries with Structural Sparse Decomposition Modeling
C. Rusu, R. Dharmakumar, S.A. Tsaftaris
ISMRM 2014
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159. Impact of Chronic Iron Deposition Following Myocardial Infarction on Gross Electrical Characteristics
I. Cokic , Kali A, Yang H, Tang RL, S.A. Tsaftaris, R. Dharmakumar
HRS 2014

160. Assessment of Myocardial Reactivity to Controlled Hypercapnia with Free-breathing T2-prepared Cardiac Blood-Oxygen-Level-Dependent MR Imaging
H.-S. Yang, R. Yumul, R. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, D. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, A.H. Conte, J.A. Fisher, R. Dharmakumar
Radiology, vol. 272, no. 2, pp. 397-406, 2014
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161. Assessment of Controlled Iso-Oxic Hypercapnic Stimulation of Myocardial Blood Flow using Oxygen Dependent Cardiac Magnetic Resonance Imaging
H. Yang, R. Yumul, R.L. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, B. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, J. Min, D.S. Berman, A.H. Conte, J. Fisher, R. Dharmakumar
ACC 2014
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162. COMT genetic reduction produces sexually-divergent effects on cortical anatomy and working memory in mice and humans
S. Sannino, A. Gozzi, A. Cerasa, D. Scheggia, F. Manago, M. Damiano, A. Galbusera, D. De Pietri Tonelli, A. Bifone, S.A. Tsaftaris, D.R. Weinberger, G. Spalletta, F. Papaleo
Cerebral Cortex, vol. 25, no. 9, pp. 2529-2541, 2015
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163. Synthetic Generation of Myocardial Blood-Oxygen-Level-Dependent MRI Time Series via Structural Sparse Decomposition Modeling
C. Rusu, R. Morisi, D. Boschetto, R. Dharmakumar, S.A. Tsaftaris
IEEE Transactions on Medical Imaging, vol. 33, no. 7, pp. 1422-1433, 2014
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164. Dominant $\beta$-catenin mutations cause intellectual disability with recognizable syndromic features
V. Tucci, T. Kleefstra, A. Hardy, I. Heise, S. Maggi, M. Willemsen, H. Hilton, C. Esapa, M. Simon, M.-T. Buenavista, L. Vizor, L. Dodero, S.A. Tsaftaris, R. Romero, W.M. Nillesen, L. Peart-Vissers, M. Kempers, A. Vulto-Van Siflhout, Z. Iqbal, M. Orlando, A. Maccione, G. Lassi, P. Farisello, A. Constestabile, T. Nieus, A. Raimondi, B. Greco, D. Cantatore, L. Gasparini, L. Berdondini, A. Bifone, A. Gozzi, S. Wells, P.M. Nolan
Journal of Clinical Investigation, vol. 124, no. 4, pp. 1468-82, 2014
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165. Large-Scale Analysis of Neuroimaging Data on Commercial Clouds with Content-Aware Resource Allocation Strategies
M. Minervini, C. Rusu, M. Damiano, V. Tucci, A. Bifone, A. Gozzi, S.A. Tsaftaris
International Journal of High Performance Computing Applications, Vol 29, Issue 4, 2015
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166. Probing Myocardial Blood Oxygenation Reserve with Controlled Hypercapnia using BOLD CMR
H. Yang, R. Yumul, R.L. Tang, I. Cokic, M. Klein, A. Kali, O. Sobczyk, B. Sharif, J. Tang, X. Bi, S.A. Tsaftaris, D. Li, J. Min, D.S. Berman, A.H. Conte, J. Fisher, R. Dharmakumar
SCMR 2014
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167. A scientist's guide to cloud computing
S.A. Tsaftaris
Computing in Science and Engineering, vol. 16, no. 1, pp. 70-76, 2014
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2013

168. Explicit shift-invariant dictionary learning
C. Rusu, D. Dumitrescu, S.A. Tsaftaris
IEEE Signal Processing Letters, vol. 21, no. 1, pp. 6-9, 2014
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169. Neuroimaging Evidence of Major Morpho-Anatomical and Functional Abnormalities in the BTBR T+TF/J Mouse Model of Autism
L. Dodero, M. Damiano, S.A. Tsaftaris, A. Galbusera, A. Bifone, M. L. Scattoni, A. Gozzi
PLoS One, vol. 8, no. 10, pp. 76655, 2013
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170. Iron Deposition Following Chronic Myocardial Infarction as a Substrate for Cardiac Electrical Anomalies: Initial Findings in a Canine Model
I. Cokic, A. Kali, X. Wang, H.-J. Yang, R. L Tang, A. Thajudeen, M Shehata, A. M. Amorn, L. Enzhao, B. Stewart, N. Bennett, D. Harlev, S.A. Tsaftaris, W.M. Jackman, S. Chugh, R. Dharmakumar
PLoS One, vol. 8, no. 9, pp. 73193, 2013
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171. Estimation of Scribble Placement for Painting Colorization
C. Rusu, S.A. Tsaftaris
ISPA 2013
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172. Learning Computationally Efficient Approximations of Complex Image Segmentation Metrics
M. Minervini, C. Rusu, S.A. Tsaftaris
ISPA 2013
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173. Active Contour Model driven by Globally Signed Region Pressure Force
M.M. Abdelsamea, S.A. Tsaftaris
DSP 2013
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174. Application-Aware Image Compression for Low Cost and Distributed Plant Phenotyping
M. Minervini, S.A. Tsaftaris
DSP 2013
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175. A novel visualization tool for art history and conservation: automated colorization of black and white archival photographs of works of art
S.A. Tsaftaris, F. Casadio, J.-L. Andral, A.K. Katsaggelos
Studies in Conservation, vol. 59, no. 3, pp. 125-135, 2014
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176. Application-Aware Approach to Compression and Transmission of H.264 Encoded Video for Automated and Centralized Transportation Surveillance
Z. Chen, E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
IEEE Transactions on Intelligent Transportation Systems, vol. 14, no. 4, pp. 2002-2007, 2013
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177. Neuroimaging Evidence of Major Morpho-Anatomical and Functional Abnormalities in the BTBR T+TF/J Mouse Model of Autism
L. Dodero, F. Sforazzini, A. Galbusera, M. Damiano, S.A. Tsaftaris, A. Bifone, M. L. Scattoni, A. Gozzi
IMFAR 2013
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178. Chronic Iron Deposition following Acute Hemorrhagic Myocardial Infarction: A Cardiovascular Magnetic Resonance Study
A. Kali, A. Kumar, I. Cokic, R. Tang, S.A. Tsaftaris, M. Friedrich, R. Dharmakumar
AHA Scientific Sessions 2012
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179. Chronic Manifestation of Post-Reperfusion Intramyocardial Hemorrhage as Regional Iron Deposition - A Cardiovascular MR Study with Ex-vivo Validation
A. Kali, A. Kumar, I. Cokic, R. Yang, S.A. Tsaftaris, R. Tang, D. Li, M.G. Friedrich, R. Dharmakumar
Circulation Cardiovascular Imaging, vol. 6, no. 2, pp. 218-228, 2013
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180. Acute Reperfusion Intramyocardial Hemorrhage Leads to Regional Chronic Iron Deposition in the Heart
A. Kali, I. Cokic, A. Kumar, S.A. Tsaftaris, R. Tang, M. Friedrich, R. Dharmakumar
SCMR 2013
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181. Acute Hemorrhagic Myocardial Infarction Leads to Localized Chronic Iron Deposition: A CMR Study
A. Kali, I. Cokic, A. Kumar, S.A. Tsaftaris, R. Tang, M. Friedrich, R. Dharmakumar
ISMRM 2013
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2012

182. Detecting ACS and Identifying Acute Ischemic Territories with Cardiac Phase-Resolved BOLD MRI at Rest
S.A. Tsaftaris, X. Zhou, R. Tang, J. Min, D. Li, R. Dharmakumar
ISMRM 2012
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183. Detecting Myocardial Ischemia at Rest with Cardiac Phase-Resolved BOLD CMR
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
Circulation Cardiovascular Imaging, vol. 6, no. 2, pp. 311-319, 2013
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184. Mouse Neuroimaging Phenotyping in the Cloud
M. Minervini, M. Damiano, V. Tucci, A. Bifone, A. Gozzi, S.A. Tsaftaris
IPTA 2012
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185. Tracking-Optimal Error Control Schemes for H.264 Compressed Video for Vehicle Surveillance
Z. Chen, E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
EUSIPCO 2012
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186. Myocardial Blood-Oxygen-Level-Dependent Magnetic Resonance Imaging with Balanced Steady-State Free Precession Imaging Approaches
R. Dharmakumar, S.A. Tsaftaris, D. Li
The Open Medical Imaging Journal, vol. 6, pp. 31-38, 2012
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187. Ischemic Extent as a Biomarker for Characterizing Severity of Coronary Artery Stenosis with Blood Oxygen-Sensitive Cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
Journal of Magnetic Resonance Imaging, vol. 35, no. 6, pp. 1338-1348, 2012
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2011

188. Detecting Myocardial Ischemic Territories in the Setting of Acute Coronary Obstructions at Rest with Cardiac Phase-Resolved Blood Oxygen Level Dependent (CP-BOLD) MRI
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
AHA Scientific Sessions 2011

189. Low-Complexity Video Compression for Automated Transportation Surveillance
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
IEEE Transactions on Circuits and Systems for Video Technology, vol. 21, no. 10, pp. 1378-1389, 2011
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190. Channel Protection for H.264 Compression in Transportation Video Surveillance Applications
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
ICIP 2011
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191. Tracking-Optimized Quantization for H.264 Compression in Transportation Video Surveillance Applications
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
ICIP 2011
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192. PHIDIAS: Plant Phenotyping with a High-throughput, Intelligent, Distributed, and Integrated Analysis System
S.A. Tsaftaris
IPPS 2011

193. An Area-based Imaging Biomarker for the Characterization of Coronary Artery Stenosis with Blood Oxygen-Sensitive MRI
S.A. Tsaftaris, R. Tang, X. Zhou, D. Li, R. Dharmakumar
ISMRM 2011
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194. Detecting Myocardial Ischemia at Rest with Cardiac Phase-Resolved BOLD MRI: Early Findings
S.A. Tsaftaris, V. Rundell, X. Zhou, Y. Liu, R. Tang, D. Li, R. Dharmakumar
ISMRM 2011
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195. Colorizing a Masterpiece
S.A. Tsaftaris, K. Lister, I. Fiedler, F. Casadio, A.K. Katsaggelos
IEEE Signal Processing Magazine, vol. 28, no. 3, pp. 113-119, 2011
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196. T2-weighted STIR Imaging of Myocardial Edema Associated with Ischemia-Reperfusion Injury: The Influence of Proton Density Effect on Image Contrast
X. Zhou, V. Rundell, Y. Liu, R. Tang, R. Klein, S. Shah, S. Zuehlsdorff, S.A. Tsaftaris, D. Li, R. Dharmakumar
Journal of Magnetic Resonance Imaging, vol. 33, no. 4, pp. 962-967, 2011
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197. A Fully Automated Statistical Method for Characterization of Flow Artifact Presence in cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Dharmakumar
SCMR 2011
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198. An Area-based Imaging Biomarker for Characterizing Coronary Artery Stenosis with Myocardial BOLD MRI
S.A. Tsaftaris, X. Zhou, D. Li, R. Dharmakumar
SCMR 2011
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199. La Joie De Vivre: The Evolution of a Masterpiece
S.A. Tsaftaris, F. Casadio, G. Gautier, J.-L. Andral, A.K. Katsaggelos
Picasso Express, J.L. Andral, , 2011-01-01

2010

200. Tracking-Optimal Pre- and Post-processing for H.264 Compression in Traffic Video Surveillance Applications
E. Soyak, S.A. Tsaftaris, A. K. Katsaggelos
ICECS 2010
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201. Quantization Optimized H.264 Encoding for Traffic Video Tracking Applications
E. Soyak, S.A. Tsaftaris, A.K. Katsaggelos
ICIP 2010
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202. Video Anomaly Detection in Spatiotemporal Context
F. Jiang, J. Yuan, S.A. Tsaftaris, A.K. Katsaggelos
ICIP 2010
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203. On the origin of myocardial edema contrast in T2-STIR images
X. Zhou, V. Rundell, Y. Liu, R. Tang, R. Klein, S. Giri, S. Shah, S.A. Tsaftaris, S. Zuehlsdorff, O. Simonetti, D. Li, R. Dharmakumar
ISMRM 2010

204. Myocardial BOLD imaging using flow compensated 2D cine bSSFP
X. Zhou, S.A. Tsaftaris, Y. Liu, R. Tang, R. Klein, S. Zuehlsdorff, D. Li, R. Dharmakumar
ISMRM 2010

205. Unsupervised and Reproducible Image-based Identifi-cation of Cardiac Phases in Cine SSFP MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Dharmakumar
ISMRM 2010

206. Automated synchronization of cardiac phases for myocardial BOLD MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Klein, A. Katsaggelos, R. Dharmakumar
ISMRM 2010

207. Unsupervised reconstruction for ungated ghost angiography by clustering of image features
S.A. Tsaftaris, E. Offerman, R. Edelman, I. Koktzoglou
ISMRM 2010

208. Automated Assessment of Ghost Artifacts in MRI
S.A. Tsaftaris, X. Zhou, R. Dharmakumar
ISMRM 2010

209. A New Quantitative Imaging Biomarker for Identifying Critical Coronary Artery Stenosis with Myocardial BOLD MRI
S.A. Tsaftaris, X. Zhou, D. Li, R. Dharmakumar
ISMRM 2010

210. Dual Contrast Cellular MRI
R. Dharmakumar, Z. Zhang, I. Koktzoglou, S.A. Tsaftaris, D. Li
ISMRM 2010

211. Artifact-reduced two-dimensional cine steady state free precession for myocardial blood-oxygen-level-dependent imaging
X. Zhou, S.A. Tsaftaris, Y. Liu, R. Tang, R. Klein, S. Zuehlsdorff, D. Li, R. Dharmakumar
Journal of Magnetic Resonance Imaging, vol. 31, no. 4, pp. 863-871, 2010
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212. Content-Aware H.264 Encoding for Traffic Video Tracking Applications
E. Soyak, S.A. Tsaftaris, A.K. Katsaggelos
ICASSP 2010
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213. Anomalous Video Event Detection Using Spatiotemporal Context
F. Jiang, J. Yuan, S.A. Tsaftaris, A.K. Katsaggelos
Computer Vision and Image Understanding, vol. 115, no. 3, pp. 323-333, 2011
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214. Fully Automated Reconstruction of Ungated Ghost Magnetic Resonance Angiograms Using Cluster Analysis
S.A. Tsaftaris, E. Offerman, R. Edelman, I. Koktzoglou
Journal of Magnetic Resonance Imaging, vol. 31, no. 3, pp. 655-662, 2010
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215. Contribution to Matisse: Radical Invention, 1913 - 1917
S.A. Tsaftaris, A.K. Katsaggelos
Matisse: Radical Invention, S. D'Alessandro, J. Elderfield, Art Institute of Chicago, 2010-01-01
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2009

216. Dual Contrast Cellular MRI
R. Dharmakumar, Z. Zhang, I. Koktzoglou, S.A. Tsaftaris, D. Li
Molecular Imaging, vol. 8, no. 5, pp. 254-63, 2009
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217. Retrieval Efficiency of DNA-Based Databases of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos
IEEE Transactions on NanoBioscience, vol. 8, no. 3, pp. 259-270, 2009
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218. Plant Phenotyping with Low Cost Digital Cameras and Image Analytics
S.A. Tsaftaris, C. Noutsos
ICSC 2009
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219. Visualization and Tracking of a Conventional Guidewire with Low Flip Angle SSFP Imaging: An Initial Study
R. Dharmakumar, I. Koktzoglou, S.A. Tsaftaris, S. Zuehlsdorff, R. Tang, G. Wright, D. Li
ISMRM 2009
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220. Visualizing and Quantifying Myocardial Oxyge-nation Changes with Statistically Optimal Colormaps
S.A. Tsaftaris, R. Tang, R. Klein, D. Li, R. Dharmakumar
ISMRM 2009
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221. An Intensity Based Statistical Approach for Left Ventricular Localization and Identification of End-Systolic and End-Diastolic Images from Cine Cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Klein, R. Dharmakumar
ISMRM 2009

222. Impact of Temporal Resolution on Cardiac Phase-Resolved Oxygen-Sensitive Myocardial Steady-State Free Precession Imaging
X. Zhou, R. Tang, R. Klein, S.A. Tsaftaris, D. Li, R. Dharmakumar
SCMR 2009
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223. Visualizing Regional Myocardial Oxygenation Changes with Statistically Optimal Colormaps
S.A. Tsaftaris, R. Tang, R. Klein, D. Li, R. Dharmakumar
SCMR 2009
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224. An Automated Method for Left Ventricular Localization and Identification of End-Systolic and End-Diastolic Images from Cine Cardiac MRI
S.A. Tsaftaris, X. Zhou, R. Tang, R. Klein, R. Dharmakumar
SCMR 2009
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225. On the mechanism of myocardial edema contrast in T2-STIR images
X. Zhou, V. Rundell, Y. Liu, R. Tang, R. Klein, S. Giri, S. Shah, S.A. Tsaftaris, S. Zuehlsdorff, O. Simonetti, D. Li, R. Dharmakumar
SCMR 2010
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226. Artifacts-reduced 2D cine SSFP with flow compensation for myocardial BOLD imaging
X. Zhou, S.A. Tsaftaris, Y. Liu, R. Tang, R. Klein, S. Zuehlsdorff, D. Li, R. Dharmakumar
SCMR 2010
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227. Automated detection and quantification of microcirculatory oxygenation changes in the heart
S.A. Tsaftaris, X. Zhou, R. Tang, D. Li, R. Dharmakumar
SCMR 2010
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2008

228. A Dynamic Programming Solution to Tracking and Elastically Matching Left Ventricular Walls in Cardiac CINE MRI
S.A. Tsaftaris, V. Andermatt, A. Schlegel, A. K. Katsaggelos, D. Li, R. Dharmakumar
ICIP 2008
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229. Local Feature Extraction for Video Copy Detection in a Database
E. Maani, S.A. Tsaftaris, A.K. Katsaggelos
ICIP 2008
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230. Automated Line Flattening of Atomic Force Microscopy Images
S.A. Tsaftaris, J. Zujovic, A.K. Katsaggelos
ICIP 2008
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231. Restoration of the Cantilever Bowing Distortion in Atomic Force Microscopy
S.A. Tsaftaris, J. Zujovic, A.K. Katsaggelos
EUSIPCO 2008
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232. Automated Tracking of a Passive Endomyocardial Stiletto Catheter with Dephased FLAPS MRI: A Feasibility Study
I. Koktzoglou, S.A. Tsaftaris, S. Zuehlsdorff, D. Li, A.K. Katsaggelos, R. Dharmakumar
ISMRM 2008
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233. The Not So Digital Future of Digital Signal Processing
S.A. Tsaftaris, A.K. Katsaggelos
Proceedings of the IEEE, vol. 96, no. 3, pp. 375-377, 2008
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234. Automated Tracking of a Passive Intramyocardial Needle with Off-Resonance MRI: A Feasibility Study
I. Koktzoglou, S.A. Tsaftaris, D. Li, A.K. Katsaggelos, R. Dharmakumar
SCMR 2008
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2007

235. DNA Microarray Image Intensity Extraction Using Eigen-spots
S.A. Tsaftaris, R. Ahuja, D. Shiell, A.K. Katsaggelos
ICIP 2007
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236. Retrieval Accuracy of Very Large DNA-Based Databases of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos
ESPC 2007
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2006

237. Joint source-channel coding for wireless object-based video communications utilizing data hiding
H. Wang, S.A. Tsaftaris, A.K. Katsaggelos
IEEE Transactions Image Processing, vol. 15, no. 8, pp. 2158-69, 2006
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238. DNA as a medium for storing digital signals
S.A. Tsaftaris, V. Hatzimanikatis, A.K. Katsaggelos
ALIFE 2006
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239. DNA Hybridization as a Similarity Criterion for Querying Digital Signals Stored in DNA Databases
S.A. Tsaftaris, V. Hatzimanikatis, A.K. Katsaggelos
ICASSP 2006
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240. DNA sequencing
S.A. Tsaftaris, A.K. Katsaggelos
Wiley Encyclopedia of Medical Devices and Instrumentation (Second Edition), J.G. Webster, John Wiley and Sons, 2006-04-07
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2005

241. In silico estimation of annealing specificity of query searches in DNA databases
S.A. Tsaftaris, V. Hatzimanikatis, A.K. Katsaggelos
Journal of Japan Society of Simulation Technology, vol. 24, no. 4, pp. 268-276, 2005
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242. On Designing DNA Databases for the Storage and Retrieval of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos
ICNC 2005
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2004

243. How can DNA-Computing be applied to Digital Signal Processing?
S.A. Tsaftaris, T.N. Pappas, E.T. Papoutsakis, A.K. Katsaggelos
IEEE Signal Processing Magazine, vol. 21, no. 6, pp. 57-61, 2004
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244. DNA computing from a signal processing viewpoint
S.A. Tsaftaris, T.N. Pappas, E.T. Papoutsakis, A.K. Katsaggelos
IEEE Signal Processing Magazine, vol. 21, no. 5, pp. 100-106, 2004
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245. Fast watermarking of MPEG-1/2 streams using compressed-domain perceptual embedding and a generalized correlator detector
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, A. Briassouli, M.G. Strintzis
EURASIP Journal on Applied Signal Processing, vol. 8, pp. 1088-1106, 2004
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246. DNA Based Matching of Digital Signals
S.A. Tsaftaris, A.K. Katsaggelos, T.N. Pappa, E.T. Papoutsakis
ICASSP 2004
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2003

247. Digital Watermarking for the Copyright Protection of Compressed Video
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, G.A. Triantafyllidis, M.G. Strintzis
Intelligent Integrated Media Communication Techniques, J. Tasic, M. Ansorge, M. Najim, Springer US, 2003-11-30
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2002

248. Fast MPEG Watermarking for Copyright Protection
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouri, M.G. Strintzis
ICECS 2002
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249. Compressed-domain Video Watermarking of MPEG Streams
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, M.G. Strintzis
ICME 2002
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2001

250. Fast compressed domain watermarking of MPEG multiplexed streams
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, M.G. Strintzis
COST 2001, Information and Knowledge Management for Integrated Media Communication Workshop
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251. Digital watermarking of MPEG-1 & MPEG-2 multiplexed streams for copyright protection
D. Simitopoulos, S.A. Tsaftaris, N.V. Boulgouris, M.G. Strintzis
DCV 2001, Workshop on Digital & Computational Video
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